Hb_027472_070

Information

Type -
Description -
Location Contig27472: 21599-50104
Sequence    

Annotation

kegg
ID rcu:RCOM_1574680
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012087366.1
description PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067JM62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22611 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28758: 22940-23266 , PASA_asmbl_28759: 25341-25489 , PASA_asmbl_28760: 35335-35534 , PASA_asmbl_28761: 37801-50227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_070 0.0 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
2 Hb_012725_060 0.0627285327 - - protein binding protein, putative [Ricinus communis]
3 Hb_006816_280 0.0646980777 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
4 Hb_004712_130 0.068469746 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
5 Hb_001242_130 0.0717591089 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
6 Hb_001999_090 0.0800940868 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
7 Hb_004787_050 0.0808203062 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
8 Hb_002063_020 0.0823823228 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
9 Hb_001998_240 0.0825790492 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
10 Hb_001865_070 0.0856908099 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
11 Hb_002235_040 0.0857041371 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
12 Hb_000094_070 0.0894102697 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
13 Hb_002053_150 0.0899970743 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
14 Hb_000497_300 0.0912463579 - - peroxisomal membrane protein [Hevea brasiliensis]
15 Hb_001157_240 0.0930188813 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_001716_040 0.0947054173 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_003943_110 0.0947745049 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
18 Hb_000366_040 0.0975792332 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_001217_050 0.0984858766 - - actin binding protein, putative [Ricinus communis]
20 Hb_003058_260 0.0985187061 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]

Gene co-expression network

sample Hb_027472_070 Hb_027472_070 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_004712_130 Hb_004712_130 Hb_027472_070--Hb_004712_130 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_012725_060--Hb_001242_130 Hb_000417_200 Hb_000417_200 Hb_012725_060--Hb_000417_200 Hb_001865_070 Hb_001865_070 Hb_012725_060--Hb_001865_070 Hb_001405_070 Hb_001405_070 Hb_012725_060--Hb_001405_070 Hb_002235_040 Hb_002235_040 Hb_012725_060--Hb_002235_040 Hb_002053_150 Hb_002053_150 Hb_006816_280--Hb_002053_150 Hb_001998_240 Hb_001998_240 Hb_006816_280--Hb_001998_240 Hb_001105_020 Hb_001105_020 Hb_006816_280--Hb_001105_020 Hb_000261_480 Hb_000261_480 Hb_006816_280--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_006816_280--Hb_004208_050 Hb_000497_300 Hb_000497_300 Hb_004712_130--Hb_000497_300 Hb_004712_130--Hb_001999_090 Hb_010344_050 Hb_010344_050 Hb_004712_130--Hb_010344_050 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020 Hb_001999_090--Hb_002235_040 Hb_006718_020 Hb_006718_020 Hb_001999_090--Hb_006718_020 Hb_007441_220 Hb_007441_220 Hb_001999_090--Hb_007441_220 Hb_002316_160 Hb_002316_160 Hb_001999_090--Hb_002316_160 Hb_003058_260 Hb_003058_260 Hb_004787_050--Hb_003058_260 Hb_004787_050--Hb_001998_240 Hb_002675_130 Hb_002675_130 Hb_004787_050--Hb_002675_130 Hb_007894_110 Hb_007894_110 Hb_004787_050--Hb_007894_110 Hb_003943_110 Hb_003943_110 Hb_004787_050--Hb_003943_110 Hb_001635_120 Hb_001635_120 Hb_004787_050--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58198 13.0883 8.22761 9.37907 8.28026 8.13435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.99019 9.24594 19.7088 15.8269 15.7387

CAGE analysis