Hb_027472_090

Information

Type -
Description -
Location Contig27472: 70737-72754
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_090 0.0 - - -
2 Hb_012305_060 0.1042173338 - - protein translocase, putative [Ricinus communis]
3 Hb_002471_170 0.1149164433 - - -
4 Hb_004545_160 0.127548705 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
5 Hb_003185_020 0.1280932815 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
6 Hb_007625_020 0.1290311625 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
7 Hb_000008_320 0.1326332671 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
8 Hb_000089_130 0.1352402251 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
9 Hb_000617_320 0.1360602261 - - 40S ribosomal protein S21B [Hevea brasiliensis]
10 Hb_000788_120 0.136419902 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
11 Hb_001454_330 0.136551557 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_073973_110 0.136599244 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
13 Hb_007451_030 0.1390058079 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
14 Hb_170305_020 0.1393259175 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
15 Hb_118977_020 0.1400917525 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
16 Hb_036369_010 0.1409151648 - - -
17 Hb_084934_010 0.141728744 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
18 Hb_025246_010 0.1432014336 - - -
19 Hb_007166_050 0.1442025604 - - -
20 Hb_002821_010 0.1443237786 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_090 Hb_027472_090 Hb_012305_060 Hb_012305_060 Hb_027472_090--Hb_012305_060 Hb_002471_170 Hb_002471_170 Hb_027472_090--Hb_002471_170 Hb_004545_160 Hb_004545_160 Hb_027472_090--Hb_004545_160 Hb_003185_020 Hb_003185_020 Hb_027472_090--Hb_003185_020 Hb_007625_020 Hb_007625_020 Hb_027472_090--Hb_007625_020 Hb_000008_320 Hb_000008_320 Hb_027472_090--Hb_000008_320 Hb_012305_060--Hb_004545_160 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_012305_060--Hb_007625_020 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_000284_010 Hb_000284_010 Hb_012305_060--Hb_000284_010 Hb_007451_030 Hb_007451_030 Hb_012305_060--Hb_007451_030 Hb_180333_010 Hb_180333_010 Hb_002471_170--Hb_180333_010 Hb_000788_120 Hb_000788_120 Hb_002471_170--Hb_000788_120 Hb_003687_140 Hb_003687_140 Hb_002471_170--Hb_003687_140 Hb_000521_150 Hb_000521_150 Hb_002471_170--Hb_000521_150 Hb_000926_290 Hb_000926_290 Hb_002471_170--Hb_000926_290 Hb_004545_160--Hb_007625_020 Hb_004545_160--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_004545_160--Hb_000366_100 Hb_012395_100 Hb_012395_100 Hb_004545_160--Hb_012395_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050 Hb_010449_020 Hb_010449_020 Hb_003185_020--Hb_010449_020 Hb_004012_010 Hb_004012_010 Hb_003185_020--Hb_004012_010 Hb_157854_010 Hb_157854_010 Hb_003185_020--Hb_157854_010 Hb_002762_060 Hb_002762_060 Hb_003185_020--Hb_002762_060 Hb_000392_270 Hb_000392_270 Hb_003185_020--Hb_000392_270 Hb_004722_060 Hb_004722_060 Hb_003185_020--Hb_004722_060 Hb_007625_020--Hb_007451_030 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_002447_030 Hb_002447_030 Hb_000008_320--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000008_320--Hb_002529_100 Hb_000085_200 Hb_000085_200 Hb_000008_320--Hb_000085_200 Hb_000008_320--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98153 1.43176 0.501562 0.421747 2.72301 4.60164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84026 5.98952 1.93207 0.499579 0

CAGE analysis