Hb_027472_130

Information

Type -
Description -
Location Contig27472: 96263-97996
Sequence    

Annotation

kegg
ID tcc:TCM_030674
description Cytochrome P450
nr
ID XP_007020549.1
description Cytochrome P450 [Theobroma cacao]
swissprot
ID A6YIH8
description Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1
trembl
ID A0A061FC67
description Cytochrome P450 OS=Theobroma cacao GN=TCM_030674 PE=3 SV=1
Gene Ontology
ID GO:0004497
description premnaspirodiene oxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_130 0.0 - - Cytochrome P450 [Theobroma cacao]
2 Hb_001269_510 0.1908865802 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_002960_110 0.1969638417 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
4 Hb_000058_050 0.2085219498 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
5 Hb_131864_030 0.2205978061 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
6 Hb_000613_040 0.2220101778 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000189_390 0.2235196831 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
8 Hb_014497_030 0.2240065157 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
9 Hb_013016_010 0.2348701269 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002942_090 0.2387063943 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
11 Hb_000424_070 0.2398973568 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
12 Hb_005675_060 0.2403693737 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
13 Hb_003026_030 0.2457498703 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
14 Hb_000803_310 0.2458172958 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
15 Hb_000010_130 0.2513648237 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
16 Hb_000003_140 0.2560727721 - - hypothetical protein glysoja_047034, partial [Glycine soja]
17 Hb_005568_090 0.25660029 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002897_070 0.2574822321 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_011609_010 0.2576388829 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
20 Hb_000076_100 0.2595390099 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_130 Hb_027472_130 Hb_001269_510 Hb_001269_510 Hb_027472_130--Hb_001269_510 Hb_002960_110 Hb_002960_110 Hb_027472_130--Hb_002960_110 Hb_000058_050 Hb_000058_050 Hb_027472_130--Hb_000058_050 Hb_131864_030 Hb_131864_030 Hb_027472_130--Hb_131864_030 Hb_000613_040 Hb_000613_040 Hb_027472_130--Hb_000613_040 Hb_000189_390 Hb_000189_390 Hb_027472_130--Hb_000189_390 Hb_002450_140 Hb_002450_140 Hb_001269_510--Hb_002450_140 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001776_200 Hb_001776_200 Hb_001269_510--Hb_001776_200 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_003026_030 Hb_003026_030 Hb_001269_510--Hb_003026_030 Hb_002960_110--Hb_000424_070 Hb_074792_010 Hb_074792_010 Hb_002960_110--Hb_074792_010 Hb_002960_110--Hb_000189_390 Hb_003529_180 Hb_003529_180 Hb_002960_110--Hb_003529_180 Hb_000300_710 Hb_000300_710 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_002609_190 Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_002942_090 Hb_002942_090 Hb_131864_030--Hb_002942_090 Hb_131864_030--Hb_000058_050 Hb_005675_060 Hb_005675_060 Hb_131864_030--Hb_005675_060 Hb_007229_030 Hb_007229_030 Hb_000613_040--Hb_007229_030 Hb_000205_150 Hb_000205_150 Hb_000613_040--Hb_000205_150 Hb_000010_130 Hb_000010_130 Hb_000613_040--Hb_000010_130 Hb_000613_040--Hb_000313_290 Hb_000318_240 Hb_000318_240 Hb_000613_040--Hb_000318_240 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000803_090 Hb_000803_090 Hb_000189_390--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_000189_390--Hb_011609_010 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.779825 3.39942 13.3024 1.33855 6.67132 1.27724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.458312 0.206033 0.144928 1.78975 0.968124

CAGE analysis