Hb_027472_140

Information

Type transcription factor
Description TF Family: mTERF
Location Contig27472: 99659-100819
Sequence    

Annotation

kegg
ID rcu:RCOM_1574760
description hypothetical protein
nr
ID XP_012087372.1
description PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22616 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28766: 99986-100259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_140 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
2 Hb_157023_020 0.0879904199 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000445_470 0.0989947344 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
4 Hb_004607_090 0.1113136181 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
5 Hb_000292_100 0.1152948637 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
6 Hb_000731_170 0.1169848639 - - PREDICTED: phospholipase A I [Jatropha curcas]
7 Hb_002893_040 0.1173447227 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
8 Hb_003647_140 0.1181502404 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
9 Hb_002572_020 0.1191014113 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
10 Hb_001726_080 0.1195326459 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
11 Hb_001089_030 0.1207485311 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
12 Hb_011344_200 0.1208323617 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
13 Hb_000375_390 0.1209075157 - - poly-A binding protein, putative [Ricinus communis]
14 Hb_065525_080 0.1223422763 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
15 Hb_183433_010 0.1225820253 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_155215_020 0.1228923473 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
17 Hb_000840_200 0.1232771737 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
18 Hb_003929_070 0.1238343442 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
19 Hb_000699_150 0.1238702073 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
20 Hb_002413_010 0.1254026432 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_027472_140 Hb_027472_140 Hb_157023_020 Hb_157023_020 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_000731_170 Hb_000731_170 Hb_027472_140--Hb_000731_170 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160 Hb_000069_480 Hb_000069_480 Hb_000445_470--Hb_000069_480 Hb_001408_110 Hb_001408_110 Hb_000445_470--Hb_001408_110 Hb_005381_020 Hb_005381_020 Hb_000445_470--Hb_005381_020 Hb_004128_130 Hb_004128_130 Hb_000445_470--Hb_004128_130 Hb_001258_100 Hb_001258_100 Hb_000445_470--Hb_001258_100 Hb_000671_080 Hb_000671_080 Hb_000445_470--Hb_000671_080 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_004607_090--Hb_000603_160 Hb_000087_070 Hb_000087_070 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_007254_020 Hb_007254_020 Hb_000292_100--Hb_007254_020 Hb_000230_400 Hb_000230_400 Hb_000292_100--Hb_000230_400 Hb_002435_100 Hb_002435_100 Hb_000292_100--Hb_002435_100 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_000847_060 Hb_000847_060 Hb_000731_170--Hb_000847_060 Hb_000161_130 Hb_000161_130 Hb_000731_170--Hb_000161_130 Hb_000917_230 Hb_000917_230 Hb_000731_170--Hb_000917_230 Hb_002461_060 Hb_002461_060 Hb_000731_170--Hb_002461_060 Hb_004781_010 Hb_004781_010 Hb_000731_170--Hb_004781_010 Hb_002893_040--Hb_001258_100 Hb_002413_010 Hb_002413_010 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002893_040--Hb_002572_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.835268 1.88794 1.4524 1.97872 0.90064 1.22997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22415 2.02543 0.369966 0.838494 1.92044

CAGE analysis