Hb_027472_150

Information

Type -
Description -
Location Contig27472: 102980-107914
Sequence    

Annotation

kegg
ID rcu:RCOM_1574790
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012087374.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
swissprot
ID Q8GY84
description DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2
trembl
ID A0A067JQG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22618 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28768: 102987-107913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_150 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
2 Hb_004970_110 0.0691247713 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
3 Hb_000058_100 0.0697350398 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
4 Hb_002728_070 0.0753796409 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
5 Hb_001579_220 0.0757585929 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
6 Hb_002473_130 0.0787981782 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
7 Hb_000086_380 0.0796670286 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
8 Hb_001199_020 0.0810290577 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
9 Hb_001946_010 0.0814743551 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_001579_320 0.0818916783 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
11 Hb_004055_030 0.0830726128 - - casein kinase, putative [Ricinus communis]
12 Hb_007317_180 0.0837581154 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
13 Hb_007044_140 0.0845715631 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
14 Hb_000025_470 0.0848347335 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
15 Hb_000205_100 0.0852510218 - - PREDICTED: exportin-4 [Jatropha curcas]
16 Hb_004689_050 0.0857241381 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002893_080 0.0861716696 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
18 Hb_004310_130 0.0874076937 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
19 Hb_000638_120 0.0885307989 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
20 Hb_000260_170 0.0888865198 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]

Gene co-expression network

sample Hb_027472_150 Hb_027472_150 Hb_004970_110 Hb_004970_110 Hb_027472_150--Hb_004970_110 Hb_000058_100 Hb_000058_100 Hb_027472_150--Hb_000058_100 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_007317_180 Hb_007317_180 Hb_004970_110--Hb_007317_180 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_004970_110--Hb_007254_040 Hb_004048_070 Hb_004048_070 Hb_004970_110--Hb_004048_070 Hb_000169_010 Hb_000169_010 Hb_004970_110--Hb_000169_010 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_000025_470 Hb_000025_470 Hb_002728_070--Hb_000025_470 Hb_054865_120 Hb_054865_120 Hb_002728_070--Hb_054865_120 Hb_002728_070--Hb_000058_100 Hb_000329_140 Hb_000329_140 Hb_002728_070--Hb_000329_140 Hb_002728_070--Hb_004310_130 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_000086_380--Hb_004310_130 Hb_000086_380--Hb_005291_030 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5355 11.6724 11.3952 15.6188 23.7539 32.2972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5177 21.8585 18.9521 25.0742 15.1308

CAGE analysis