Hb_027472_160

Information

Type -
Description -
Location Contig27472: 108656-113488
Sequence    

Annotation

kegg
ID rcu:RCOM_1574800
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_012087375.1
description PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
swissprot
ID O23708
description Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1
trembl
ID A0A067JZW5
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_22619 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-2-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28769: 108720-113595 , PASA_asmbl_28770: 111991-112294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_160 0.0 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
2 Hb_002811_090 0.0958038809 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_003020_330 0.0983126404 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
4 Hb_000645_140 0.0999884714 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
5 Hb_000915_120 0.101419812 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
6 Hb_000948_220 0.1027682326 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
7 Hb_007120_090 0.1030429122 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_002081_030 0.1038987547 - - unnamed protein product [Coffea canephora]
9 Hb_000111_100 0.1040495102 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
10 Hb_000093_110 0.1054875753 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
11 Hb_000735_040 0.106120082 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_002838_030 0.107334102 - - 40S ribosomal protein S25A [Hevea brasiliensis]
13 Hb_000576_060 0.1093084116 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
14 Hb_007245_080 0.1121695592 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
15 Hb_003057_020 0.1128785659 - - 40S ribosomal protein S23, putative [Ricinus communis]
16 Hb_000203_020 0.1135906599 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_000878_020 0.1152406608 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
18 Hb_002811_080 0.1166138041 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
19 Hb_019516_100 0.117410328 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_008948_050 0.1189898811 - - hypothetical protein JCGZ_13339 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_160 Hb_027472_160 Hb_002811_090 Hb_002811_090 Hb_027472_160--Hb_002811_090 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_007120_090 Hb_007120_090 Hb_027472_160--Hb_007120_090 Hb_003057_020 Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_002811_090--Hb_007120_090 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000093_110 Hb_000093_110 Hb_000645_140--Hb_000093_110 Hb_002588_010 Hb_002588_010 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_019516_100 Hb_019516_100 Hb_000645_140--Hb_019516_100 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_000915_120--Hb_002838_030 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000915_120--Hb_000062_390 Hb_000087_130 Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_000948_220--Hb_007120_090 Hb_000948_220--Hb_002838_030 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6508 17.677 73.306 68.9286 29.1303 32.0756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.371 340.276 84.2864 40.5013 30.3536

CAGE analysis