Hb_027472_190

Information

Type transcription factor
Description TF Family: MYB
Location Contig27472: 124710-127421
Sequence    

Annotation

kegg
ID rcu:RCOM_1574830
description r2r3-myb transcription factor, putative
nr
ID XP_002513377.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID P20024
description Myb-related protein Zm1 OS=Zea mays PE=2 SV=1
trembl
ID B9RI08
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1574830 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein zm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28776: 125243-125909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_190 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_094437_030 0.108449673 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
3 Hb_000392_490 0.1434460714 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
4 Hb_003714_030 0.1511330596 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_016564_050 0.1581493037 - - -
6 Hb_007295_020 0.1585940685 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
7 Hb_090390_010 0.1587298711 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
8 Hb_094437_020 0.1617193229 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_001396_130 0.1619982232 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000207_240 0.1632730403 - - hypothetical protein RCOM_0686540 [Ricinus communis]
11 Hb_005329_030 0.1638155538 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
12 Hb_000309_070 0.1644518158 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
13 Hb_001277_380 0.1670916018 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
14 Hb_003983_010 0.1760730594 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
15 Hb_001629_050 0.1777898695 - - structural constituent of cell wall, putative [Ricinus communis]
16 Hb_000856_210 0.1779305681 - - nitrate transporter, putative [Ricinus communis]
17 Hb_006916_140 0.1790492607 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
18 Hb_044380_010 0.181040436 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
19 Hb_006355_070 0.1820218799 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
20 Hb_006351_120 0.1839055445 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]

Gene co-expression network

sample Hb_027472_190 Hb_027472_190 Hb_094437_030 Hb_094437_030 Hb_027472_190--Hb_094437_030 Hb_000392_490 Hb_000392_490 Hb_027472_190--Hb_000392_490 Hb_003714_030 Hb_003714_030 Hb_027472_190--Hb_003714_030 Hb_016564_050 Hb_016564_050 Hb_027472_190--Hb_016564_050 Hb_007295_020 Hb_007295_020 Hb_027472_190--Hb_007295_020 Hb_090390_010 Hb_090390_010 Hb_027472_190--Hb_090390_010 Hb_094437_030--Hb_090390_010 Hb_094437_030--Hb_000392_490 Hb_001396_130 Hb_001396_130 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_094437_030--Hb_003714_030 Hb_000392_490--Hb_000309_070 Hb_006916_140 Hb_006916_140 Hb_000392_490--Hb_006916_140 Hb_001629_050 Hb_001629_050 Hb_000392_490--Hb_001629_050 Hb_005329_030 Hb_005329_030 Hb_000392_490--Hb_005329_030 Hb_026198_020 Hb_026198_020 Hb_000392_490--Hb_026198_020 Hb_000963_120 Hb_000963_120 Hb_000392_490--Hb_000963_120 Hb_000207_240 Hb_000207_240 Hb_003714_030--Hb_000207_240 Hb_044380_010 Hb_044380_010 Hb_003714_030--Hb_044380_010 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_001248_140 Hb_001248_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_004530_010 Hb_004530_010 Hb_003714_030--Hb_004530_010 Hb_001277_380 Hb_001277_380 Hb_016564_050--Hb_001277_380 Hb_016564_050--Hb_007295_020 Hb_145080_010 Hb_145080_010 Hb_016564_050--Hb_145080_010 Hb_016564_050--Hb_094437_030 Hb_112791_030 Hb_112791_030 Hb_016564_050--Hb_112791_030 Hb_006351_120 Hb_006351_120 Hb_016564_050--Hb_006351_120 Hb_007295_020--Hb_001277_380 Hb_007295_020--Hb_145080_010 Hb_007295_020--Hb_112791_030 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_007295_020--Hb_094437_030 Hb_090390_010--Hb_026198_020 Hb_002374_510 Hb_002374_510 Hb_090390_010--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_090390_010--Hb_009122_010 Hb_090390_010--Hb_001396_130 Hb_003983_010 Hb_003983_010 Hb_090390_010--Hb_003983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.53625 0.399979 6.78454 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.477166 2.87349 7.75656

CAGE analysis