Hb_027472_210

Information

Type -
Description -
Location Contig27472: 146990-148595
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08220g
description POPTRDRAFT_562863; hypothetical protein
nr
ID XP_012087377.1
description PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22624 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28777: 146933-148688 , PASA_asmbl_28778: 147276-147852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_210 0.0 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
2 Hb_063805_010 0.0949476988 - - -
3 Hb_092337_020 0.1101424047 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
4 Hb_000563_330 0.1145722143 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_007083_010 0.1168437396 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
6 Hb_000169_190 0.1224159578 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
7 Hb_005291_040 0.1269316801 - - PREDICTED: gamma-gliadin [Jatropha curcas]
8 Hb_058551_010 0.1270111215 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_012184_050 0.1271513391 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
10 Hb_006452_160 0.1294983984 - - structural constituent of ribosome, putative [Ricinus communis]
11 Hb_000045_320 0.1306804788 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
12 Hb_002043_090 0.131396228 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_007951_100 0.1328697185 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001269_200 0.1328715085 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_007123_070 0.1335644019 - - -
16 Hb_000283_130 0.1378546517 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
17 Hb_002805_170 0.1380429125 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
18 Hb_003430_030 0.1395545409 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
19 Hb_185516_010 0.1404135481 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_000140_330 0.1404354311 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_210 Hb_027472_210 Hb_063805_010 Hb_063805_010 Hb_027472_210--Hb_063805_010 Hb_092337_020 Hb_092337_020 Hb_027472_210--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_000169_190 Hb_000169_190 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_063805_010--Hb_092337_020 Hb_001300_100 Hb_001300_100 Hb_063805_010--Hb_001300_100 Hb_063805_010--Hb_000563_330 Hb_002947_040 Hb_002947_040 Hb_063805_010--Hb_002947_040 Hb_042509_030 Hb_042509_030 Hb_063805_010--Hb_042509_030 Hb_092337_020--Hb_000563_330 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_000175_090 Hb_000175_090 Hb_092337_020--Hb_000175_090 Hb_007123_070 Hb_007123_070 Hb_092337_020--Hb_007123_070 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_014720_170 Hb_014720_170 Hb_007083_010--Hb_014720_170 Hb_000504_170 Hb_000504_170 Hb_007083_010--Hb_000504_170 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_000169_190--Hb_058551_010 Hb_010738_010 Hb_010738_010 Hb_005291_040--Hb_010738_010 Hb_002997_160 Hb_002997_160 Hb_005291_040--Hb_002997_160 Hb_005883_010 Hb_005883_010 Hb_005291_040--Hb_005883_010 Hb_000283_130 Hb_000283_130 Hb_005291_040--Hb_000283_130 Hb_007229_040 Hb_007229_040 Hb_005291_040--Hb_007229_040 Hb_001117_190 Hb_001117_190 Hb_005291_040--Hb_001117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.1105 98.0269 98.452 14.6196 71.1138 65.4834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0582 29.8087 13.1899 17.2412 10.7734

CAGE analysis