Hb_027472_230

Information

Type -
Description -
Location Contig27472: 168817-170771
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08170g
description POPTRDRAFT_764420; hypothetical protein
nr
ID XP_012087380.1
description PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
swissprot
ID Q9LTV3
description Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana GN=SAUR72 PE=2 SV=1
trembl
ID A0A067JM77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22626 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 011_E14.ab1: 170134-170925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_230 0.0 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
2 Hb_004195_180 0.0857202143 - - unnamed protein product [Coffea canephora]
3 Hb_008289_050 0.1061512378 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
4 Hb_001720_060 0.1880645631 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
5 Hb_001832_020 0.223607335 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
6 Hb_000390_260 0.2355119264 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
7 Hb_001085_100 0.2394129886 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_008479_020 0.2503050551 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
9 Hb_024621_030 0.2507038075 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
10 Hb_001856_090 0.2665299477 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
11 Hb_003435_060 0.2898795127 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_000976_070 0.2925758661 - - gulonolactone oxidase, putative [Ricinus communis]
13 Hb_002253_060 0.3030322672 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000048_020 0.3069339083 - - -
15 Hb_003992_250 0.3073156103 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
16 Hb_006420_090 0.308352907 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
17 Hb_003052_230 0.3153182987 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_360 0.3165179584 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
19 Hb_000975_150 0.3176563061 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
20 Hb_032631_010 0.3224212296 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_230 Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_027472_230--Hb_004195_180 Hb_008289_050 Hb_008289_050 Hb_027472_230--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_027472_230--Hb_001720_060 Hb_001832_020 Hb_001832_020 Hb_027472_230--Hb_001832_020 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260 Hb_001085_100 Hb_001085_100 Hb_027472_230--Hb_001085_100 Hb_004195_180--Hb_008289_050 Hb_004195_180--Hb_001720_060 Hb_004195_180--Hb_000390_260 Hb_024621_030 Hb_024621_030 Hb_004195_180--Hb_024621_030 Hb_000976_070 Hb_000976_070 Hb_004195_180--Hb_000976_070 Hb_008289_050--Hb_001720_060 Hb_003398_030 Hb_003398_030 Hb_008289_050--Hb_003398_030 Hb_008289_050--Hb_001085_100 Hb_000077_240 Hb_000077_240 Hb_008289_050--Hb_000077_240 Hb_002253_060 Hb_002253_060 Hb_001720_060--Hb_002253_060 Hb_003435_060 Hb_003435_060 Hb_001720_060--Hb_003435_060 Hb_004460_050 Hb_004460_050 Hb_001720_060--Hb_004460_050 Hb_001832_020--Hb_001085_100 Hb_008479_020 Hb_008479_020 Hb_001832_020--Hb_008479_020 Hb_001856_090 Hb_001856_090 Hb_001832_020--Hb_001856_090 Hb_032631_010 Hb_032631_010 Hb_001832_020--Hb_032631_010 Hb_001045_050 Hb_001045_050 Hb_001832_020--Hb_001045_050 Hb_000390_260--Hb_024621_030 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_000975_150 Hb_000975_150 Hb_000390_260--Hb_000975_150 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_001085_100--Hb_008479_020 Hb_001085_100--Hb_001856_090 Hb_009813_080 Hb_009813_080 Hb_001085_100--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_001085_100--Hb_002311_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.663107 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317509 0.749324 0 1.59851 0

CAGE analysis