Hb_027474_010

Information

Type -
Description -
Location Contig27474: 12017-17123
Sequence    

Annotation

kegg
ID mtr:MTR_3g082250
description ATFP4-like protein
nr
ID XP_012067039.1
description PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28785: 16985-17290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027474_010 0.0 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
2 Hb_002097_210 0.0770374625 - - conserved hypothetical protein [Ricinus communis]
3 Hb_123078_010 0.0871188382 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
4 Hb_001989_080 0.0887133456 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000041_160 0.0918633775 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_105814_020 0.1047398448 - - berberine bridge enzyme [Hevea brasiliensis]
7 Hb_001046_040 0.1053246155 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_004143_140 0.110582926 - - glycosyltransferase, partial [Arabidopsis thaliana]
9 Hb_007007_090 0.1227162646 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_001677_120 0.1245014304 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_002335_010 0.1280849801 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
12 Hb_044624_010 0.1295427429 - - -
13 Hb_175670_010 0.1312274968 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_000813_090 0.1324028177 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
15 Hb_004730_010 0.1324581298 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
16 Hb_145139_010 0.1338040318 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
17 Hb_008550_030 0.1352764406 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
18 Hb_002239_020 0.1412671393 - - MLO, putative [Theobroma cacao]
19 Hb_009247_030 0.1426187849 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_011470_010 0.1449619617 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_027474_010 Hb_027474_010 Hb_002097_210 Hb_002097_210 Hb_027474_010--Hb_002097_210 Hb_123078_010 Hb_123078_010 Hb_027474_010--Hb_123078_010 Hb_001989_080 Hb_001989_080 Hb_027474_010--Hb_001989_080 Hb_000041_160 Hb_000041_160 Hb_027474_010--Hb_000041_160 Hb_105814_020 Hb_105814_020 Hb_027474_010--Hb_105814_020 Hb_001046_040 Hb_001046_040 Hb_027474_010--Hb_001046_040 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_145139_010 Hb_145139_010 Hb_002097_210--Hb_145139_010 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010 Hb_123078_010--Hb_000041_160 Hb_123078_010--Hb_105814_020 Hb_002267_030 Hb_002267_030 Hb_123078_010--Hb_002267_030 Hb_011101_010 Hb_011101_010 Hb_123078_010--Hb_011101_010 Hb_004218_290 Hb_004218_290 Hb_123078_010--Hb_004218_290 Hb_004143_140 Hb_004143_140 Hb_001989_080--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_001989_080--Hb_000044_050 Hb_001989_080--Hb_001046_040 Hb_030370_070 Hb_030370_070 Hb_001989_080--Hb_030370_070 Hb_044624_010 Hb_044624_010 Hb_001989_080--Hb_044624_010 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_000041_160--Hb_105814_020 Hb_004730_010 Hb_004730_010 Hb_000041_160--Hb_004730_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100 Hb_105814_020--Hb_004730_010 Hb_105814_020--Hb_002267_030 Hb_009403_010 Hb_009403_010 Hb_105814_020--Hb_009403_010 Hb_001046_040--Hb_044624_010 Hb_000813_090 Hb_000813_090 Hb_001046_040--Hb_000813_090 Hb_115114_010 Hb_115114_010 Hb_001046_040--Hb_115114_010 Hb_004324_220 Hb_004324_220 Hb_001046_040--Hb_004324_220 Hb_175670_010 Hb_175670_010 Hb_001046_040--Hb_175670_010 Hb_001046_040--Hb_004143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03176 0.131539 0.461297 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136844 0.455233

CAGE analysis