Hb_027506_040

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig27506: 75426-79736
Sequence    

Annotation

kegg
ID rcu:RCOM_0632150
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012072118.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
swissprot
ID O64688
description Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic OS=Arabidopsis thaliana GN=E1-BETA-2 PE=2 SV=1
trembl
ID A0A067KP26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04629 PE=4 SV=1
Gene Ontology
ID GO:0004739
description pyruvate dehydrogenase e1 component subunit beta- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28828: 75515-79550 , PASA_asmbl_28829: 76014-79550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027506_040 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
2 Hb_000926_080 0.0802219893 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
3 Hb_000200_300 0.0942055695 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
4 Hb_011671_260 0.0973289369 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
5 Hb_000398_170 0.0974140825 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
6 Hb_003602_060 0.0978693023 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
7 Hb_000684_030 0.0986297067 - - syntaxin, putative [Ricinus communis]
8 Hb_001269_620 0.0988130909 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
9 Hb_021576_150 0.1009335979 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
10 Hb_004965_110 0.1011969188 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_003266_030 0.1014538079 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
12 Hb_000057_110 0.1043604477 - - PREDICTED: kinesin-13A [Jatropha curcas]
13 Hb_000330_090 0.1052152677 - - ornithine carbamoyltransferase, putative [Ricinus communis]
14 Hb_000676_020 0.1066942705 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
15 Hb_000235_070 0.1068986544 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
16 Hb_000189_570 0.1086992877 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
17 Hb_000116_250 0.1089273944 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
18 Hb_049575_010 0.1091285143 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
19 Hb_005332_080 0.1097135841 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
20 Hb_001900_140 0.1097811639 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_027506_040 Hb_027506_040 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_000057_110 Hb_000057_110 Hb_000200_300--Hb_000057_110 Hb_000200_300--Hb_003266_030 Hb_000200_300--Hb_004965_110 Hb_000200_300--Hb_000684_030 Hb_000200_300--Hb_000086_080 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_011671_260--Hb_006907_060 Hb_011671_260--Hb_004965_110 Hb_000122_190 Hb_000122_190 Hb_000398_170--Hb_000122_190 Hb_005214_170 Hb_005214_170 Hb_000398_170--Hb_005214_170 Hb_000398_170--Hb_003266_030 Hb_000907_180 Hb_000907_180 Hb_000398_170--Hb_000907_180 Hb_000116_250 Hb_000116_250 Hb_000398_170--Hb_000116_250 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000684_030--Hb_000057_110 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_000684_030--Hb_003266_030 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1993 16.6181 58.5677 38.2781 4.86537 8.23104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4998 23.1844 19.4545 17.4052 37.5083

CAGE analysis