Hb_027556_060

Information

Type -
Description -
Location Contig27556: 25127-28302
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03520g
description hypothetical protein
nr
ID XP_006368500.1
description hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
swissprot
ID Q39131
description Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
trembl
ID U5GSG6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03520g PE=4 SV=1
Gene Ontology
ID GO:0009055
description lamin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28840: 25103-26314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_060 0.0 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
2 Hb_001776_070 0.0980323796 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
3 Hb_003216_140 0.0988507348 - - F-box protein SNE, putative [Ricinus communis]
4 Hb_146901_020 0.1011827266 - - -
5 Hb_000152_590 0.1042009517 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_001247_090 0.1163357314 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
7 Hb_000411_020 0.1165785644 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000805_270 0.1173432761 - - PREDICTED: expansin-A4 [Gossypium raimondii]
9 Hb_010672_010 0.1186536378 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
10 Hb_001252_050 0.1191156958 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
11 Hb_000749_120 0.1198850784 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
12 Hb_005144_080 0.1199619364 - - Serine carboxypeptidase, putative [Ricinus communis]
13 Hb_000011_370 0.1227075538 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
14 Hb_003875_040 0.1259636098 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
15 Hb_003189_010 0.1270846465 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
16 Hb_001782_100 0.1289560878 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_005731_070 0.1304712335 - - conserved hypothetical protein [Ricinus communis]
18 Hb_189208_050 0.1309343599 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
19 Hb_004357_030 0.1312657207 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_004984_020 0.1323156588 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]

Gene co-expression network

sample Hb_027556_060 Hb_027556_060 Hb_001776_070 Hb_001776_070 Hb_027556_060--Hb_001776_070 Hb_003216_140 Hb_003216_140 Hb_027556_060--Hb_003216_140 Hb_146901_020 Hb_146901_020 Hb_027556_060--Hb_146901_020 Hb_000152_590 Hb_000152_590 Hb_027556_060--Hb_000152_590 Hb_001247_090 Hb_001247_090 Hb_027556_060--Hb_001247_090 Hb_000411_020 Hb_000411_020 Hb_027556_060--Hb_000411_020 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_000696_030 Hb_000696_030 Hb_001776_070--Hb_000696_030 Hb_005679_110 Hb_005679_110 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_005144_080 Hb_005144_080 Hb_001776_070--Hb_005144_080 Hb_189208_050 Hb_189208_050 Hb_003216_140--Hb_189208_050 Hb_003216_140--Hb_001247_090 Hb_024868_010 Hb_024868_010 Hb_003216_140--Hb_024868_010 Hb_003216_140--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_003216_140--Hb_000631_100 Hb_146901_020--Hb_000152_590 Hb_010672_010 Hb_010672_010 Hb_146901_020--Hb_010672_010 Hb_013358_030 Hb_013358_030 Hb_146901_020--Hb_013358_030 Hb_003875_040 Hb_003875_040 Hb_146901_020--Hb_003875_040 Hb_146901_020--Hb_003216_140 Hb_000152_590--Hb_010672_010 Hb_001782_100 Hb_001782_100 Hb_000152_590--Hb_001782_100 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_006351_030 Hb_006351_030 Hb_000152_590--Hb_006351_030 Hb_006916_120 Hb_006916_120 Hb_000152_590--Hb_006916_120 Hb_002304_100 Hb_002304_100 Hb_001247_090--Hb_002304_100 Hb_001247_090--Hb_189208_050 Hb_000568_020 Hb_000568_020 Hb_001247_090--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_001247_090--Hb_000834_130 Hb_001247_090--Hb_000152_590 Hb_000411_020--Hb_000631_100 Hb_000411_020--Hb_189208_050 Hb_002641_140 Hb_002641_140 Hb_000411_020--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_000411_020--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_000411_020--Hb_005357_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0912247 5.54468 24.229 34.2604 0.0190078 0.0576135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463998 0 0 19.7369 5.32686

CAGE analysis