Hb_027556_080

Information

Type -
Description -
Location Contig27556: 30091-31860
Sequence    

Annotation

kegg
ID rcu:RCOM_1442290
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012067584.1
description PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
swissprot
ID Q9ZUI0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1
trembl
ID A0A067LBT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26968 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g24130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_080 0.0 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
2 Hb_005529_050 0.0828144326 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
3 Hb_163950_060 0.0847024521 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_011980_020 0.0873481155 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001985_010 0.0877523033 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000336_170 0.0935031774 - - Polcalcin Jun o, putative [Ricinus communis]
7 Hb_007943_040 0.0966112244 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
8 Hb_004096_040 0.1012549461 - - cytochrome P450, putative [Ricinus communis]
9 Hb_005687_020 0.1066979676 - - P66 protein [Hevea brasiliensis]
10 Hb_000261_540 0.1113620308 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
11 Hb_003973_050 0.1129046036 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
12 Hb_001796_010 0.1185122629 - - purine transporter, putative [Ricinus communis]
13 Hb_186671_020 0.1191510744 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_009897_030 0.1199394157 - - -
15 Hb_008978_010 0.1208774972 - - transmembrane receptor, putative [Ricinus communis]
16 Hb_018609_010 0.1215042964 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000215_120 0.1279738808 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
18 Hb_028487_080 0.1283166102 - - Pectinesterase-1 precursor, putative [Ricinus communis]
19 Hb_000395_160 0.1311875754 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
20 Hb_013057_010 0.1345760798 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]

Gene co-expression network

sample Hb_027556_080 Hb_027556_080 Hb_005529_050 Hb_005529_050 Hb_027556_080--Hb_005529_050 Hb_163950_060 Hb_163950_060 Hb_027556_080--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_027556_080--Hb_011980_020 Hb_001985_010 Hb_001985_010 Hb_027556_080--Hb_001985_010 Hb_000336_170 Hb_000336_170 Hb_027556_080--Hb_000336_170 Hb_007943_040 Hb_007943_040 Hb_027556_080--Hb_007943_040 Hb_028487_080 Hb_028487_080 Hb_005529_050--Hb_028487_080 Hb_004096_040 Hb_004096_040 Hb_005529_050--Hb_004096_040 Hb_000876_060 Hb_000876_060 Hb_005529_050--Hb_000876_060 Hb_015473_020 Hb_015473_020 Hb_005529_050--Hb_015473_020 Hb_000846_020 Hb_000846_020 Hb_005529_050--Hb_000846_020 Hb_163950_060--Hb_011980_020 Hb_163950_060--Hb_000336_170 Hb_163950_060--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_163950_060--Hb_008978_010 Hb_186671_020 Hb_186671_020 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_011980_020--Hb_007943_040 Hb_011980_020--Hb_005687_020 Hb_011980_020--Hb_000336_170 Hb_001796_010 Hb_001796_010 Hb_011980_020--Hb_001796_010 Hb_011980_020--Hb_008978_010 Hb_054886_010 Hb_054886_010 Hb_001985_010--Hb_054886_010 Hb_001985_010--Hb_000336_170 Hb_001985_010--Hb_163950_060 Hb_001985_010--Hb_011980_020 Hb_001985_010--Hb_007943_040 Hb_000261_540 Hb_000261_540 Hb_000336_170--Hb_000261_540 Hb_000336_170--Hb_007943_040 Hb_000336_170--Hb_008978_010 Hb_009897_030 Hb_009897_030 Hb_000336_170--Hb_009897_030 Hb_007943_040--Hb_009897_030 Hb_007943_040--Hb_000261_540 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141162 5.25056 0 0.127557 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0258684 0 0 0 0.042847

CAGE analysis