Hb_027625_010

Information

Type -
Description -
Location Contig27625: 13552-17612
Sequence    

Annotation

kegg
ID tcc:TCM_037143
description Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1
nr
ID XP_012077452.1
description PREDICTED: protein sym-1-like [Jatropha curcas]
swissprot
ID Q54XX9
description PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1
trembl
ID A0A067KPM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07786 PE=4 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal membrane 22 kda (mpv17 pmp22) family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28910: 13614-13868 , PASA_asmbl_28911: 13890-17654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027625_010 0.0 - - PREDICTED: protein sym-1-like [Jatropha curcas]
2 Hb_000817_030 0.0606505754 - - mak, putative [Ricinus communis]
3 Hb_000046_290 0.0736489519 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
4 Hb_011644_030 0.0788551623 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
5 Hb_000230_510 0.0793298099 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
6 Hb_011537_110 0.0794296635 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
7 Hb_000072_180 0.0802593679 - - PREDICTED: EVI5-like protein [Jatropha curcas]
8 Hb_002742_090 0.082373392 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_001235_030 0.0840965664 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
10 Hb_001461_010 0.0842909504 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
11 Hb_000441_190 0.0850416578 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
12 Hb_114336_020 0.0857995325 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
13 Hb_000635_150 0.0858759082 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
14 Hb_028515_010 0.0869010793 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
15 Hb_000985_060 0.089250532 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
16 Hb_005568_120 0.0895720959 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_001083_020 0.0898589373 - - -
18 Hb_017948_010 0.090743724 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
19 Hb_005092_060 0.0910024324 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
20 Hb_006117_070 0.0930001724 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027625_010 Hb_027625_010 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_000046_290 Hb_000046_290 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_005463_140 Hb_005463_140 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_005289_030 Hb_005289_030 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_011457_090 Hb_011457_090 Hb_011537_110--Hb_011457_090 Hb_000300_220 Hb_000300_220 Hb_011537_110--Hb_000300_220 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_000224_120 Hb_000224_120 Hb_011537_110--Hb_000224_120 Hb_011537_110--Hb_000046_290 Hb_006420_100 Hb_006420_100 Hb_000072_180--Hb_006420_100 Hb_000046_350 Hb_000046_350 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04777 1.10628 1.27115 3.35541 1.76443 4.10695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01006 8.82445 7.99238 3.13995 3.18246

CAGE analysis