Hb_027634_010

Information

Type -
Description -
Location Contig27634: 9376-11271
Sequence    

Annotation

kegg
ID rcu:RCOM_0469800
description protein binding protein, putative
nr
ID XP_002531610.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID B9T041
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0469800 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027634_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000175_480 0.0860103536 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
3 Hb_002042_200 0.0983454877 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_001623_400 0.1378932154 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018133_110 0.1406293951 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001959_030 0.1432261954 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004122_030 0.1462419662 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
8 Hb_004021_100 0.1521320786 - - -
9 Hb_001971_070 0.1539656539 - - unnamed protein product [Coffea canephora]
10 Hb_017491_040 0.1579464336 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
11 Hb_164162_020 0.1611910625 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
12 Hb_002301_420 0.1624809986 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
13 Hb_000347_230 0.1626226468 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
14 Hb_006538_070 0.1630068347 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
15 Hb_166813_010 0.1653018249 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_025254_020 0.1659632629 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
17 Hb_002232_400 0.1673122682 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
18 Hb_048476_010 0.1694605656 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
19 Hb_098795_010 0.1697954815 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
20 Hb_000540_030 0.1710158882 - - Chitinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_027634_010 Hb_027634_010 Hb_000175_480 Hb_000175_480 Hb_027634_010--Hb_000175_480 Hb_002042_200 Hb_002042_200 Hb_027634_010--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_027634_010--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_027634_010--Hb_018133_110 Hb_001959_030 Hb_001959_030 Hb_027634_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_027634_010--Hb_004122_030 Hb_000175_480--Hb_002042_200 Hb_000441_170 Hb_000441_170 Hb_000175_480--Hb_000441_170 Hb_002232_400 Hb_002232_400 Hb_000175_480--Hb_002232_400 Hb_002900_070 Hb_002900_070 Hb_000175_480--Hb_002900_070 Hb_098795_010 Hb_098795_010 Hb_000175_480--Hb_098795_010 Hb_002042_200--Hb_001623_400 Hb_002042_200--Hb_018133_110 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_002042_200--Hb_001959_030 Hb_003064_010 Hb_003064_010 Hb_001623_400--Hb_003064_010 Hb_000347_230 Hb_000347_230 Hb_001623_400--Hb_000347_230 Hb_004021_100 Hb_004021_100 Hb_001623_400--Hb_004021_100 Hb_003734_120 Hb_003734_120 Hb_001623_400--Hb_003734_120 Hb_001623_400--Hb_017491_040 Hb_000032_560 Hb_000032_560 Hb_018133_110--Hb_000032_560 Hb_018133_110--Hb_000347_230 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_018133_110--Hb_003734_120 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_002016_020 Hb_002016_020 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_001959_030--Hb_000175_480 Hb_004122_030--Hb_002042_200 Hb_000099_020 Hb_000099_020 Hb_004122_030--Hb_000099_020 Hb_004122_030--Hb_001959_030 Hb_004122_030--Hb_001369_620 Hb_005237_070 Hb_005237_070 Hb_004122_030--Hb_005237_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130689 0.0522746 0.0243078 0.109781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.307539 0

CAGE analysis