Hb_027634_030

Information

Type -
Description -
Location Contig27634: 19089-24310
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002533148.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9T4H9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0000910 PE=3 SV=1
Gene Ontology
ID GO:0000166
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28912: 23269-24396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027634_030 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_009083_070 0.1294527421 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
3 Hb_000014_050 0.1316208898 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
4 Hb_000270_520 0.1381190441 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
5 Hb_007380_140 0.140837617 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
6 Hb_145880_010 0.1416967631 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_142218_020 0.1428522835 - - actin family protein [Populus trichocarpa]
8 Hb_005548_020 0.1451979004 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
9 Hb_003058_260 0.1454493979 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
10 Hb_158604_010 0.1482025549 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
11 Hb_001366_310 0.1483971077 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
12 Hb_007982_030 0.1490531277 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
13 Hb_007894_110 0.1505092473 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
14 Hb_000600_060 0.1506383796 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_002006_040 0.1506840941 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
16 Hb_143766_060 0.1510766172 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
17 Hb_000976_210 0.1512033057 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
18 Hb_003455_020 0.1518446712 - - PREDICTED: transportin-1 [Jatropha curcas]
19 Hb_000115_160 0.1519144512 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
20 Hb_003082_010 0.15239724 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]

Gene co-expression network

sample Hb_027634_030 Hb_027634_030 Hb_009083_070 Hb_009083_070 Hb_027634_030--Hb_009083_070 Hb_000014_050 Hb_000014_050 Hb_027634_030--Hb_000014_050 Hb_000270_520 Hb_000270_520 Hb_027634_030--Hb_000270_520 Hb_007380_140 Hb_007380_140 Hb_027634_030--Hb_007380_140 Hb_145880_010 Hb_145880_010 Hb_027634_030--Hb_145880_010 Hb_142218_020 Hb_142218_020 Hb_027634_030--Hb_142218_020 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_002217_170 Hb_002217_170 Hb_000014_050--Hb_002217_170 Hb_005137_040 Hb_005137_040 Hb_000014_050--Hb_005137_040 Hb_002056_090 Hb_002056_090 Hb_000014_050--Hb_002056_090 Hb_000014_050--Hb_002046_110 Hb_003835_070 Hb_003835_070 Hb_000014_050--Hb_003835_070 Hb_001410_020 Hb_001410_020 Hb_000014_050--Hb_001410_020 Hb_000270_520--Hb_142218_020 Hb_003050_390 Hb_003050_390 Hb_000270_520--Hb_003050_390 Hb_000270_510 Hb_000270_510 Hb_000270_520--Hb_000270_510 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_000035_200 Hb_000035_200 Hb_000270_520--Hb_000035_200 Hb_007380_140--Hb_142218_020 Hb_002686_040 Hb_002686_040 Hb_007380_140--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210 Hb_158604_010 Hb_158604_010 Hb_007380_140--Hb_158604_010 Hb_145880_010--Hb_009083_070 Hb_001318_020 Hb_001318_020 Hb_145880_010--Hb_001318_020 Hb_145880_010--Hb_184798_080 Hb_006922_010 Hb_006922_010 Hb_145880_010--Hb_006922_010 Hb_008160_030 Hb_008160_030 Hb_145880_010--Hb_008160_030 Hb_001205_200 Hb_001205_200 Hb_145880_010--Hb_001205_200 Hb_142218_020--Hb_009083_070 Hb_142218_020--Hb_002686_040 Hb_142218_020--Hb_005137_040 Hb_142218_020--Hb_005918_010 Hb_142218_020--Hb_004129_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68672 2.08413 1.58048 2.00503 2.42118 0.993351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30043 0.945395 2.36285 1.99328 0.822031

CAGE analysis