Hb_027638_010

Information

Type -
Description -
Location Contig27638: 8138-9824
Sequence    

Annotation

kegg
ID rcu:RCOM_0595350
description Protein KES1, putative
nr
ID XP_002527809.1
description Protein KES1, putative [Ricinus communis]
swissprot
ID Q9LVD4
description Oxysterol-binding protein-related protein 4C OS=Arabidopsis thaliana GN=ORP4C PE=2 SV=1
trembl
ID B9SP90
description Protein KES1, putative (Fragment) OS=Ricinus communis GN=RCOM_0595350 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027638_010 0.0 - - Protein KES1, putative [Ricinus communis]
2 Hb_088080_040 0.1036716282 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
3 Hb_002551_030 0.1069483835 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
4 Hb_001338_170 0.1120174622 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
5 Hb_161881_010 0.1150264514 - - laccase, putative [Ricinus communis]
6 Hb_001508_010 0.1191831716 - - conserved hypothetical protein [Ricinus communis]
7 Hb_171685_070 0.1248783075 - - -
8 Hb_001081_050 0.1253545651 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
9 Hb_000123_070 0.1279445371 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_002553_030 0.1281869909 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
11 Hb_009193_050 0.1326021527 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
12 Hb_012528_040 0.1339348605 - - -
13 Hb_007645_060 0.1385636867 - - cytochrome f [Hevea brasiliensis]
14 Hb_000208_220 0.1416998934 - - -
15 Hb_149598_010 0.1420966475 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
16 Hb_000922_110 0.1472210607 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
17 Hb_031194_010 0.1473454542 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
18 Hb_034168_070 0.1483381105 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
19 Hb_179142_010 0.1484799364 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
20 Hb_077242_020 0.1487610343 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]

Gene co-expression network

sample Hb_027638_010 Hb_027638_010 Hb_088080_040 Hb_088080_040 Hb_027638_010--Hb_088080_040 Hb_002551_030 Hb_002551_030 Hb_027638_010--Hb_002551_030 Hb_001338_170 Hb_001338_170 Hb_027638_010--Hb_001338_170 Hb_161881_010 Hb_161881_010 Hb_027638_010--Hb_161881_010 Hb_001508_010 Hb_001508_010 Hb_027638_010--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_027638_010--Hb_171685_070 Hb_031194_010 Hb_031194_010 Hb_088080_040--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_088080_040--Hb_004811_010 Hb_007645_060 Hb_007645_060 Hb_088080_040--Hb_007645_060 Hb_003693_060 Hb_003693_060 Hb_088080_040--Hb_003693_060 Hb_088080_040--Hb_001338_170 Hb_179142_010 Hb_179142_010 Hb_088080_040--Hb_179142_010 Hb_062192_020 Hb_062192_020 Hb_002551_030--Hb_062192_020 Hb_002551_030--Hb_001508_010 Hb_002551_030--Hb_171685_070 Hb_034168_010 Hb_034168_010 Hb_002551_030--Hb_034168_010 Hb_077242_020 Hb_077242_020 Hb_002551_030--Hb_077242_020 Hb_001338_170--Hb_007645_060 Hb_149598_010 Hb_149598_010 Hb_001338_170--Hb_149598_010 Hb_007645_050 Hb_007645_050 Hb_001338_170--Hb_007645_050 Hb_159308_010 Hb_159308_010 Hb_001338_170--Hb_159308_010 Hb_000627_200 Hb_000627_200 Hb_001338_170--Hb_000627_200 Hb_002010_010 Hb_002010_010 Hb_161881_010--Hb_002010_010 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_079902_010 Hb_079902_010 Hb_001508_010--Hb_079902_010 Hb_000373_140 Hb_000373_140 Hb_001508_010--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_001508_010--Hb_077242_020 Hb_000336_130 Hb_000336_130 Hb_171685_070--Hb_000336_130 Hb_171685_070--Hb_161881_010 Hb_171685_070--Hb_002010_010 Hb_171685_070--Hb_003732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271094 0.758722 1.26721 0.23938 0 0.133595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0782086 16.546

CAGE analysis