Hb_027654_020

Information

Type -
Description -
Location Contig27654: 16104-23447
Sequence    

Annotation

kegg
ID tcc:TCM_021695
description LMBR1-like membrane protein isoform 1
nr
ID XP_012087854.1
description PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
swissprot
ID Q9SR93
description LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2
trembl
ID A0A067JWQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25014 PE=4 SV=1
Gene Ontology
ID GO:0005886
description limr family protein at5g01460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28915: 16099-23460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027654_020 0.0 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
2 Hb_000120_910 0.0586119664 - - plant ubiquilin, putative [Ricinus communis]
3 Hb_000300_550 0.0602101176 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_005723_020 0.0704870615 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000529_060 0.0722344517 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
6 Hb_103747_020 0.074164777 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
7 Hb_000046_600 0.0744126053 - - PREDICTED: cullin-1-like [Jatropha curcas]
8 Hb_005322_050 0.0749266188 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
9 Hb_001135_120 0.0765032682 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
10 Hb_000949_020 0.0766677869 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
11 Hb_000809_160 0.076835697 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
12 Hb_000580_030 0.0768843147 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_000977_300 0.0770332155 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_007800_020 0.0773290215 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
15 Hb_010407_060 0.0783566225 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
16 Hb_002284_170 0.0784147666 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
17 Hb_001699_010 0.0790728702 - - drought-inducible protein [Manihot esculenta]
18 Hb_004517_020 0.0804462328 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
19 Hb_000302_170 0.0811220589 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
20 Hb_000890_030 0.0816276871 - - plastid CUL1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_027654_020 Hb_027654_020 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_000300_550 Hb_000300_550 Hb_027654_020--Hb_000300_550 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_005322_050 Hb_005322_050 Hb_000300_550--Hb_005322_050 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_172257_010 Hb_172257_010 Hb_000300_550--Hb_172257_010 Hb_000302_170 Hb_000302_170 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_103747_020--Hb_002686_040 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_103747_020--Hb_008226_090 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000046_600--Hb_000977_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.537 27.8669 27.6691 26.6329 20.4768 15.1908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.32048 8.46835 12.4178 17.6133 13.6535

CAGE analysis