Hb_027654_050

Information

Type -
Description -
Location Contig27654: 44732-54041
Sequence    

Annotation

kegg
ID rcu:RCOM_0643630
description ubiquitin-protein ligase, putative
nr
ID XP_012087853.1
description PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25013 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28917: 53402-53728 , PASA_asmbl_28918: 44802-54060 , PASA_asmbl_28919: 46128-46229 , PASA_asmbl_28920: 45762-54136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027654_050 0.0 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
2 Hb_001776_160 0.0634169827 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
3 Hb_017225_020 0.0663888655 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
4 Hb_001512_080 0.0695465104 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
5 Hb_002110_200 0.0721269135 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001904_090 0.0721642924 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
7 Hb_000254_050 0.0728774934 - - hypothetical protein VITISV_010510 [Vitis vinifera]
8 Hb_000673_020 0.0743958819 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
9 Hb_000224_140 0.0762565348 - - ribonuclease z, chloroplast, putative [Ricinus communis]
10 Hb_143766_010 0.0764985306 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_004672_010 0.0774042322 - - ecotropic viral integration site, putative [Ricinus communis]
12 Hb_000571_020 0.079066421 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
13 Hb_001396_100 0.082617008 - - DNA binding protein, putative [Ricinus communis]
14 Hb_007576_170 0.0837184745 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000789_230 0.0839723011 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
16 Hb_000431_070 0.0843812188 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
17 Hb_002000_140 0.0857863499 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
18 Hb_006831_120 0.0863946961 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
19 Hb_068056_030 0.0872729791 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
20 Hb_002676_090 0.0882493927 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_027654_050 Hb_027654_050 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_001776_160--Hb_002110_200 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_001512_080--Hb_000254_050 Hb_001512_080--Hb_001085_120 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_002110_200--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_002110_200--Hb_000789_230 Hb_002110_200--Hb_000453_120 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25606 4.08509 9.26205 11.6537 6.47905 8.62699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9006 26.718 20.6349 13.2249 10.6436

CAGE analysis