Hb_027654_060

Information

Type -
Description -
Location Contig27654: 55961-57462
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12370g
description POPTRDRAFT_576973; hypothetical protein
nr
ID Q39963.1
description RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
swissprot
ID Q39963
description Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1
trembl
ID A0A067JNQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25012 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable pyridoxal 5 -phosphate synthase subunit pdx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28921: 55651-57082 , PASA_asmbl_28922: 55651-57023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027654_060 0.0 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
2 Hb_000614_220 0.0665083935 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
3 Hb_082609_010 0.0670675553 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
4 Hb_002799_110 0.0749208894 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
5 Hb_000962_040 0.0860753002 - - heat shock protein binding protein, putative [Ricinus communis]
6 Hb_003020_220 0.0942272791 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
7 Hb_028486_030 0.095120272 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
8 Hb_000853_190 0.0953853901 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_000352_270 0.096642058 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
10 Hb_000510_290 0.1019211986 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_001898_160 0.1063054586 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
12 Hb_018133_090 0.1073145523 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004324_270 0.1086959382 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
14 Hb_012675_050 0.1090791104 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019263_020 0.1097590644 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
16 Hb_011909_100 0.1129535409 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000046_050 0.1136317059 - - PREDICTED: LEC14B homolog [Jatropha curcas]
18 Hb_001268_420 0.1144301228 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
19 Hb_003053_020 0.1163618728 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_000614_160 0.1165709604 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_027654_060 Hb_027654_060 Hb_000614_220 Hb_000614_220 Hb_027654_060--Hb_000614_220 Hb_082609_010 Hb_082609_010 Hb_027654_060--Hb_082609_010 Hb_002799_110 Hb_002799_110 Hb_027654_060--Hb_002799_110 Hb_000962_040 Hb_000962_040 Hb_027654_060--Hb_000962_040 Hb_003020_220 Hb_003020_220 Hb_027654_060--Hb_003020_220 Hb_028486_030 Hb_028486_030 Hb_027654_060--Hb_028486_030 Hb_000614_220--Hb_002799_110 Hb_000614_160 Hb_000614_160 Hb_000614_220--Hb_000614_160 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_000352_270 Hb_000352_270 Hb_082609_010--Hb_000352_270 Hb_082609_010--Hb_000614_220 Hb_082609_010--Hb_003020_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_002799_110--Hb_000614_160 Hb_003086_150 Hb_003086_150 Hb_002799_110--Hb_003086_150 Hb_000260_030 Hb_000260_030 Hb_002799_110--Hb_000260_030 Hb_002490_020 Hb_002490_020 Hb_002799_110--Hb_002490_020 Hb_004324_270 Hb_004324_270 Hb_000962_040--Hb_004324_270 Hb_000962_040--Hb_000614_220 Hb_011909_100 Hb_011909_100 Hb_000962_040--Hb_011909_100 Hb_000962_040--Hb_028486_030 Hb_000853_190 Hb_000853_190 Hb_000962_040--Hb_000853_190 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_003020_220--Hb_000510_290 Hb_000680_140 Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_026549_040 Hb_026549_040 Hb_028486_030--Hb_026549_040 Hb_028486_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.046 34.7383 55.0497 30.7483 35.5101 52.722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.1365 143.667 129.74 41.1183 112.475

CAGE analysis