Hb_027654_070

Information

Type -
Description -
Location Contig27654: 64145-64906
Sequence    

Annotation

kegg
ID rcu:RCOM_0643410
description hypothetical protein
nr
ID XP_002528090.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SR92
description Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1
trembl
ID B9SQ21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0643410 PE=4 SV=1
Gene Ontology
ID GO:0009534
description rhodanese-like domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28923: 63916-64975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027654_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001975_050 0.1294231763 - - Tyrosine-specific transport protein, putative [Ricinus communis]
3 Hb_003992_050 0.1520830779 - - delta 9 desaturase, putative [Ricinus communis]
4 Hb_001343_120 0.152178922 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000207_140 0.1536093043 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
6 Hb_002540_060 0.1540408744 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
7 Hb_002435_090 0.1630736665 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_000637_070 0.1672072506 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
9 Hb_002999_030 0.1715505863 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
10 Hb_188739_010 0.1753516172 - - protein binding protein, putative [Ricinus communis]
11 Hb_000028_150 0.1757423352 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
12 Hb_006487_040 0.1762851139 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
13 Hb_000768_120 0.1853019687 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
14 Hb_012653_010 0.185827509 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_000110_240 0.1884773201 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
16 Hb_004447_050 0.1888140746 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
17 Hb_002400_010 0.1889252099 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
18 Hb_000042_390 0.1897854056 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
19 Hb_000816_210 0.1901628439 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
20 Hb_000934_260 0.1904490399 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_027654_070 Hb_027654_070 Hb_001975_050 Hb_001975_050 Hb_027654_070--Hb_001975_050 Hb_003992_050 Hb_003992_050 Hb_027654_070--Hb_003992_050 Hb_001343_120 Hb_001343_120 Hb_027654_070--Hb_001343_120 Hb_000207_140 Hb_000207_140 Hb_027654_070--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_027654_070--Hb_002540_060 Hb_002435_090 Hb_002435_090 Hb_027654_070--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_001975_050--Hb_002435_090 Hb_001975_050--Hb_001343_120 Hb_001975_050--Hb_003992_050 Hb_003992_050--Hb_002435_090 Hb_003992_050--Hb_000207_140 Hb_140360_010 Hb_140360_010 Hb_003992_050--Hb_140360_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_001343_120--Hb_002540_060 Hb_000207_140--Hb_002435_090 Hb_000207_140--Hb_188739_010 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002540_060--Hb_002435_090 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_140360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35737 6.40131 75.0323 9.49706 8.27927 5.17078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.954472 0.136415 0.967914 0.778834 24.1266

CAGE analysis