Hb_027684_010

Information

Type -
Description -
Location Contig27684: 27250-29072
Sequence    

Annotation

kegg
ID rcu:RCOM_0504250
description hypothetical protein
nr
ID XP_002530722.1
description hypothetical protein RCOM_0504250 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0504250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28941: 27656-29062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027684_010 0.0 - - hypothetical protein RCOM_0504250 [Ricinus communis]
2 Hb_000722_030 0.0779564755 - - putative plant disease resistance family protein [Populus trichocarpa]
3 Hb_001655_080 0.0827706757 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_002066_100 0.0833416993 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
5 Hb_002518_040 0.0844805644 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_021443_060 0.0873354214 - - PTH-1 family protein [Populus trichocarpa]
7 Hb_000358_160 0.0885448841 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
8 Hb_023582_010 0.0957809574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016297_010 0.096903474 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
10 Hb_001269_060 0.0978488586 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
11 Hb_002042_180 0.0993013662 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_003101_020 0.1013928009 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
13 Hb_001148_110 0.1021472563 - - -
14 Hb_000313_250 0.1030330698 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
15 Hb_007313_030 0.1032061423 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
16 Hb_001680_020 0.1047713082 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
17 Hb_000890_170 0.1055429709 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
18 Hb_001258_130 0.105718552 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
19 Hb_092516_010 0.1067709795 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
20 Hb_002374_470 0.107605875 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027684_010 Hb_027684_010 Hb_000722_030 Hb_000722_030 Hb_027684_010--Hb_000722_030 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_002066_100 Hb_002066_100 Hb_027684_010--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_027684_010--Hb_002518_040 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160 Hb_000722_030--Hb_002518_040 Hb_023582_010 Hb_023582_010 Hb_000722_030--Hb_023582_010 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_001655_080--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_001655_080--Hb_092516_010 Hb_046590_010 Hb_046590_010 Hb_001655_080--Hb_046590_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_001638_190 Hb_001638_190 Hb_001655_080--Hb_001638_190 Hb_002066_100--Hb_019053_040 Hb_002066_100--Hb_023582_010 Hb_001258_130 Hb_001258_130 Hb_002066_100--Hb_001258_130 Hb_001511_210 Hb_001511_210 Hb_002066_100--Hb_001511_210 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_002518_040--Hb_001439_050 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030 Hb_021443_060--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_021443_060--Hb_000313_250 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_021443_060--Hb_000358_160 Hb_021443_060--Hb_023582_010 Hb_000358_160--Hb_092516_010 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162079 1.69545 18.9466 7.72878 0.158216 0.110487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0478738 0.0376542 0 1.05883 9.35059

CAGE analysis