Hb_027745_010

Information

Type -
Description -
Location Contig27745: 2949-5326
Sequence    

Annotation

kegg
ID rcu:RCOM_1082080
description 50S ribosomal protein L2, putative
nr
ID XP_002515004.1
description 50S ribosomal protein L2, putative [Ricinus communis]
swissprot
ID P21434
description 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1
trembl
ID B9RMN5
description 50S ribosomal protein L2, putative OS=Ricinus communis GN=RCOM_1082080 PE=4 SV=1
Gene Ontology
ID GO:0043231
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027745_010 0.0 - - 50S ribosomal protein L2, putative [Ricinus communis]
2 Hb_159305_020 0.106182858 - - 50S ribosomal protein L2-B [Medicago truncatula]
3 Hb_003915_030 0.1672459364 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_008085_020 0.1702075043 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
5 Hb_006040_010 0.1786261463 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
6 Hb_145745_010 0.1807625048 - - BnaUnng00830D [Brassica napus]
7 Hb_103255_010 0.1809771555 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_007645_020 0.1824576536 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
9 Hb_072695_010 0.1885887156 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_041813_030 0.1887342688 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
11 Hb_006040_160 0.1899937041 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
12 Hb_000100_120 0.1935299995 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
13 Hb_006040_030 0.1953863405 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
14 Hb_086691_010 0.1958243636 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_054839_010 0.1961594867 - - PsbC, partial (chloroplast) [Asimina parviflora]
16 Hb_151061_040 0.196171452 - - putative retrotransposon protein [Phyllostachys edulis]
17 Hb_000031_070 0.1994555549 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
18 Hb_003693_040 0.2000973528 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
19 Hb_006040_020 0.2002338508 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
20 Hb_001338_010 0.2004034382 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_027745_010 Hb_027745_010 Hb_159305_020 Hb_159305_020 Hb_027745_010--Hb_159305_020 Hb_003915_030 Hb_003915_030 Hb_027745_010--Hb_003915_030 Hb_008085_020 Hb_008085_020 Hb_027745_010--Hb_008085_020 Hb_006040_010 Hb_006040_010 Hb_027745_010--Hb_006040_010 Hb_145745_010 Hb_145745_010 Hb_027745_010--Hb_145745_010 Hb_103255_010 Hb_103255_010 Hb_027745_010--Hb_103255_010 Hb_159305_020--Hb_008085_020 Hb_041813_030 Hb_041813_030 Hb_159305_020--Hb_041813_030 Hb_159305_020--Hb_103255_010 Hb_007645_020 Hb_007645_020 Hb_159305_020--Hb_007645_020 Hb_159305_020--Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_027522_020 Hb_027522_020 Hb_003915_030--Hb_027522_020 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_003915_030--Hb_007645_020 Hb_008085_020--Hb_006040_010 Hb_008085_020--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_008085_020--Hb_171685_080 Hb_006040_030 Hb_006040_030 Hb_008085_020--Hb_006040_030 Hb_000326_100 Hb_000326_100 Hb_008085_020--Hb_000326_100 Hb_008085_020--Hb_007645_020 Hb_006040_010--Hb_006040_020 Hb_006040_010--Hb_006040_030 Hb_006040_010--Hb_171685_080 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_004138_020 Hb_004138_020 Hb_145745_010--Hb_004138_020 Hb_001081_070 Hb_001081_070 Hb_145745_010--Hb_001081_070 Hb_003477_020 Hb_003477_020 Hb_145745_010--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_145745_010--Hb_009095_020 Hb_141708_010 Hb_141708_010 Hb_145745_010--Hb_141708_010 Hb_006331_010 Hb_006331_010 Hb_145745_010--Hb_006331_010 Hb_000388_020 Hb_000388_020 Hb_103255_010--Hb_000388_020 Hb_072695_010 Hb_072695_010 Hb_103255_010--Hb_072695_010 Hb_000959_380 Hb_000959_380 Hb_103255_010--Hb_000959_380 Hb_006302_050 Hb_006302_050 Hb_103255_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_103255_010--Hb_003144_020 Hb_106850_010 Hb_106850_010 Hb_103255_010--Hb_106850_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.332561 0 0.262026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.214175 0.12633 0.154556 0.0508593 9.70295

CAGE analysis