Hb_027746_010

Information

Type -
Description -
Location Contig27746: 7787-12067
Sequence    

Annotation

kegg
ID rcu:RCOM_1469670
description glycerophosphoryl diester phosphodiesterase, putative (EC:3.1.4.46)
nr
ID XP_012080388.1
description PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
swissprot
ID Q9C907
description Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana GN=GDPD5 PE=2 SV=1
trembl
ID A0A067KHN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11730 PE=4 SV=1
Gene Ontology
ID GO:0005773
description probable glycerophosphoryl diester phosphodiesterase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28978: 7870-12090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027746_010 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
2 Hb_003206_070 0.1082796966 - - organic anion transporter, putative [Ricinus communis]
3 Hb_000928_020 0.1160448772 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
4 Hb_003016_020 0.117324073 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
5 Hb_000676_250 0.1237538809 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
6 Hb_003994_290 0.1264712994 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
7 Hb_007460_020 0.1292371416 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
8 Hb_145314_010 0.1295557117 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
9 Hb_000019_030 0.1301255573 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_004204_140 0.132543006 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
11 Hb_000130_050 0.1340934775 - - 14-3-3 protein, putative [Ricinus communis]
12 Hb_001818_090 0.1351566069 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000573_020 0.1358318231 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
14 Hb_007765_020 0.1366502234 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
15 Hb_004055_030 0.1372634873 - - casein kinase, putative [Ricinus communis]
16 Hb_000005_280 0.1377231539 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
17 Hb_011671_240 0.1386920705 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
18 Hb_002998_060 0.1401413841 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
19 Hb_000096_010 0.1403455621 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
20 Hb_000409_020 0.1407675318 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]

Gene co-expression network

sample Hb_027746_010 Hb_027746_010 Hb_003206_070 Hb_003206_070 Hb_027746_010--Hb_003206_070 Hb_000928_020 Hb_000928_020 Hb_027746_010--Hb_000928_020 Hb_003016_020 Hb_003016_020 Hb_027746_010--Hb_003016_020 Hb_000676_250 Hb_000676_250 Hb_027746_010--Hb_000676_250 Hb_003994_290 Hb_003994_290 Hb_027746_010--Hb_003994_290 Hb_007460_020 Hb_007460_020 Hb_027746_010--Hb_007460_020 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000096_010 Hb_000096_010 Hb_000928_020--Hb_000096_010 Hb_004046_020 Hb_004046_020 Hb_000928_020--Hb_004046_020 Hb_000928_020--Hb_003206_070 Hb_000749_220 Hb_000749_220 Hb_000928_020--Hb_000749_220 Hb_000138_110 Hb_000138_110 Hb_000928_020--Hb_000138_110 Hb_000928_020--Hb_003177_030 Hb_013726_020 Hb_013726_020 Hb_003016_020--Hb_013726_020 Hb_001360_040 Hb_001360_040 Hb_003016_020--Hb_001360_040 Hb_008511_130 Hb_008511_130 Hb_003016_020--Hb_008511_130 Hb_003016_020--Hb_003206_070 Hb_000620_010 Hb_000620_010 Hb_003016_020--Hb_000620_010 Hb_000761_020 Hb_000761_020 Hb_003016_020--Hb_000761_020 Hb_000676_250--Hb_003177_030 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_005144_160 Hb_005144_160 Hb_000676_250--Hb_005144_160 Hb_032808_010 Hb_032808_010 Hb_003994_290--Hb_032808_010 Hb_002016_170 Hb_002016_170 Hb_003994_290--Hb_002016_170 Hb_003994_290--Hb_001711_020 Hb_008511_120 Hb_008511_120 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_000521_080 Hb_000521_080 Hb_003994_290--Hb_000521_080 Hb_000159_090 Hb_000159_090 Hb_007460_020--Hb_000159_090 Hb_001159_130 Hb_001159_130 Hb_007460_020--Hb_001159_130 Hb_014834_050 Hb_014834_050 Hb_007460_020--Hb_014834_050 Hb_010964_040 Hb_010964_040 Hb_007460_020--Hb_010964_040 Hb_026198_070 Hb_026198_070 Hb_007460_020--Hb_026198_070 Hb_000116_270 Hb_000116_270 Hb_007460_020--Hb_000116_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7761 7.1732 23.5288 30.5622 18.8992 33.4532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.046 13.8946 50.0097 29.344 12.2303

CAGE analysis