Hb_027746_020

Information

Type -
Description -
Location Contig27746: 12906-16514
Sequence    

Annotation

kegg
ID rcu:RCOM_1469680
description replication factor A 1, rfa1, putative
nr
ID XP_012080387.1
description PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
swissprot
ID Q9SD82
description Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1
trembl
ID A0A067K8L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11729 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 70 kda dna-binding subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28979: 12956-14258 , PASA_asmbl_28980: 14590-16550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027746_020 0.0 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
2 Hb_009193_090 0.1292902818 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
3 Hb_133004_010 0.132328551 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
4 Hb_002676_120 0.1343233359 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
5 Hb_007545_120 0.1399710981 - - NADH:cytochrome b5 reductase [Vernicia fordii]
6 Hb_003050_260 0.1475778466 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
7 Hb_004137_100 0.1489566094 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
8 Hb_000678_010 0.1490942741 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
9 Hb_011930_150 0.1551140283 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_001482_050 0.1554687916 - - COR413-PM2, putative [Ricinus communis]
11 Hb_000987_040 0.1559644894 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
12 Hb_010381_010 0.1585459664 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_010812_070 0.1608509645 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_005754_040 0.1623474808 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
15 Hb_004586_150 0.1631830071 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
16 Hb_000152_790 0.1647022759 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
17 Hb_005333_060 0.1651453825 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
18 Hb_001946_220 0.1676085185 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
19 Hb_000184_240 0.1692122003 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
20 Hb_002913_010 0.1704616134 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027746_020 Hb_027746_020 Hb_009193_090 Hb_009193_090 Hb_027746_020--Hb_009193_090 Hb_133004_010 Hb_133004_010 Hb_027746_020--Hb_133004_010 Hb_002676_120 Hb_002676_120 Hb_027746_020--Hb_002676_120 Hb_007545_120 Hb_007545_120 Hb_027746_020--Hb_007545_120 Hb_003050_260 Hb_003050_260 Hb_027746_020--Hb_003050_260 Hb_004137_100 Hb_004137_100 Hb_027746_020--Hb_004137_100 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_009193_090--Hb_002676_120 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_006570_160 Hb_006570_160 Hb_009193_090--Hb_006570_160 Hb_000830_020 Hb_000830_020 Hb_133004_010--Hb_000830_020 Hb_001482_050 Hb_001482_050 Hb_133004_010--Hb_001482_050 Hb_001660_100 Hb_001660_100 Hb_133004_010--Hb_001660_100 Hb_133004_010--Hb_006570_160 Hb_001227_120 Hb_001227_120 Hb_133004_010--Hb_001227_120 Hb_005754_040 Hb_005754_040 Hb_133004_010--Hb_005754_040 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_002676_120--Hb_006570_160 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_007545_120--Hb_001660_100 Hb_001104_230 Hb_001104_230 Hb_007545_120--Hb_001104_230 Hb_001104_100 Hb_001104_100 Hb_007545_120--Hb_001104_100 Hb_002217_350 Hb_002217_350 Hb_007545_120--Hb_002217_350 Hb_007545_120--Hb_001633_080 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_003050_260--Hb_005754_040 Hb_004586_150 Hb_004586_150 Hb_004137_100--Hb_004586_150 Hb_004137_100--Hb_009193_090 Hb_000184_240 Hb_000184_240 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31348 1.16031 8.3281 7.094 1.81029 2.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98053 1.61445 2.29046 7.64391 1.00677

CAGE analysis