Hb_027751_070

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig27751: 84161-86193
Sequence    

Annotation

kegg
ID rcu:RCOM_0200040
description transcription factor, putative
nr
ID XP_002533412.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8RWD0
description Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2
trembl
ID B9T593
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0200040 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28985: 84262-85733 , PASA_asmbl_28986: 85780-86157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027751_070 0.0 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
2 Hb_000083_010 0.0345314105 - - -
3 Hb_020859_010 0.0425421298 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
4 Hb_000398_110 0.0470248417 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
5 Hb_000977_260 0.0514803228 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
6 Hb_002040_070 0.051954116 - - -
7 Hb_001210_110 0.0531101114 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
8 Hb_003053_090 0.0540607563 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_005656_220 0.0566041959 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
10 Hb_004150_020 0.0630956749 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_003208_010 0.0633152502 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_000893_040 0.0652607803 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
13 Hb_001038_040 0.0663541444 - - -
14 Hb_002161_010 0.0701051421 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
15 Hb_000003_530 0.0713855004 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
16 Hb_003251_010 0.07299625 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
17 Hb_015981_010 0.0732570989 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_020805_090 0.0760397229 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_013818_020 0.0762427564 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
20 Hb_008489_030 0.0762621804 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_027751_070 Hb_027751_070 Hb_000083_010 Hb_000083_010 Hb_027751_070--Hb_000083_010 Hb_020859_010 Hb_020859_010 Hb_027751_070--Hb_020859_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_027751_070--Hb_000977_260 Hb_002040_070 Hb_002040_070 Hb_027751_070--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_027751_070--Hb_001210_110 Hb_000083_010--Hb_000398_110 Hb_000083_010--Hb_000977_260 Hb_000083_010--Hb_001210_110 Hb_003208_010 Hb_003208_010 Hb_000083_010--Hb_003208_010 Hb_000083_010--Hb_020859_010 Hb_003053_090 Hb_003053_090 Hb_020859_010--Hb_003053_090 Hb_015981_010 Hb_015981_010 Hb_020859_010--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_020859_010--Hb_000893_040 Hb_004150_020 Hb_004150_020 Hb_020859_010--Hb_004150_020 Hb_008489_030 Hb_008489_030 Hb_020859_010--Hb_008489_030 Hb_000398_110--Hb_000977_260 Hb_000398_110--Hb_003208_010 Hb_003251_010 Hb_003251_010 Hb_000398_110--Hb_003251_010 Hb_000282_110 Hb_000282_110 Hb_000398_110--Hb_000282_110 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_003208_010 Hb_000977_260--Hb_000893_040 Hb_000977_260--Hb_008489_030 Hb_000977_260--Hb_020859_010 Hb_005656_220 Hb_005656_220 Hb_002040_070--Hb_005656_220 Hb_002040_070--Hb_001210_110 Hb_002040_070--Hb_003053_090 Hb_002040_070--Hb_020859_010 Hb_006495_030 Hb_006495_030 Hb_002040_070--Hb_006495_030 Hb_006040_090 Hb_006040_090 Hb_001210_110--Hb_006040_090 Hb_001210_110--Hb_005656_220 Hb_001210_110--Hb_006495_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.0954 2.4963 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0190912 0 0 67.2448

CAGE analysis