Hb_027760_010

Information

Type -
Description -
Location Contig27760: 10348-14802
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009352mg
description hypothetical protein
nr
ID XP_012067668.1
description PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L214
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15625 PE=4 SV=1
Gene Ontology
ID GO:0005515
description mandelonitrile isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28987: 11160-25555 , PASA_asmbl_28993: 15718-15916
cDNA
(Sanger)
(ID:Location)		 038_C22.ab1: 12245-25555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_010 0.0 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
2 Hb_028347_010 0.0892855471 - - -
3 Hb_000630_060 0.1054547083 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
4 Hb_002045_040 0.1190938875 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000714_030 0.1210192709 - - Nucleosome assembly [Gossypium arboreum]
6 Hb_000123_230 0.121963931 - - conserved hypothetical protein [Ricinus communis]
7 Hb_019516_020 0.1260234604 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006816_220 0.1283402474 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
9 Hb_007317_150 0.1295804543 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_000098_190 0.1302209228 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
11 Hb_011381_060 0.1309435434 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
12 Hb_000154_080 0.1321272891 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
13 Hb_175215_010 0.1335924476 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
14 Hb_005690_010 0.1341525333 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
15 Hb_001538_120 0.1341724884 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
16 Hb_001564_130 0.1356720651 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_003966_040 0.1363484836 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
18 Hb_000454_050 0.1375954023 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
19 Hb_003927_140 0.138014166 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
20 Hb_019249_010 0.1385990687 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_027760_010 Hb_027760_010 Hb_028347_010 Hb_028347_010 Hb_027760_010--Hb_028347_010 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_002045_040 Hb_002045_040 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_019516_020 Hb_019516_020 Hb_027760_010--Hb_019516_020 Hb_000684_090 Hb_000684_090 Hb_028347_010--Hb_000684_090 Hb_011381_060 Hb_011381_060 Hb_028347_010--Hb_011381_060 Hb_001951_140 Hb_001951_140 Hb_028347_010--Hb_001951_140 Hb_000887_020 Hb_000887_020 Hb_028347_010--Hb_000887_020 Hb_028347_010--Hb_002045_040 Hb_033594_110 Hb_033594_110 Hb_000630_060--Hb_033594_110 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_002045_040--Hb_011381_060 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_002045_040--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_002045_040--Hb_002374_170 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_182305_020 Hb_182305_020 Hb_000123_230--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_000123_230--Hb_000510_110 Hb_000123_230--Hb_000630_060 Hb_008175_040 Hb_008175_040 Hb_000123_230--Hb_008175_040 Hb_006816_220 Hb_006816_220 Hb_000123_230--Hb_006816_220 Hb_000454_050 Hb_000454_050 Hb_000123_230--Hb_000454_050 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_000331_290 Hb_000331_290 Hb_019516_020--Hb_000331_290 Hb_019516_020--Hb_002374_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4599 6.99736 12.9704 8.03414 27.4064 13.0026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2555 36.079 7.53913 5.49832 5.90508

CAGE analysis