Hb_027792_020

Information

Type -
Description -
Location Contig27792: 27714-31762
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23290g
description POPTRDRAFT_770569; hypothetical protein
nr
ID XP_012080956.1
description PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
swissprot
ID Q500Z2
description Probable protein S-acyltransferase 15 OS=Arabidopsis thaliana GN=PAT15 PE=2 SV=1
trembl
ID B9HUI5
description S-acyltransferase OS=Populus trichocarpa GN=POPTR_0010s23290g PE=3 SV=2
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29002: 26042-31818 , PASA_asmbl_29003: 26332-30709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027792_020 0.0 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
2 Hb_000215_160 0.1566002311 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
3 Hb_002374_230 0.1652548205 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
4 Hb_000742_170 0.1674389695 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_004724_410 0.1717513663 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
6 Hb_000212_460 0.1745214833 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
7 Hb_003292_030 0.1750744582 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
8 Hb_011861_060 0.1838232916 - - -
9 Hb_001098_050 0.1839098464 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
10 Hb_004096_050 0.1859409843 - - hypothetical protein B456_006G229700 [Gossypium raimondii]
11 Hb_000002_310 0.1868083316 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
12 Hb_009524_030 0.1914822368 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
13 Hb_004449_120 0.1919284042 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
14 Hb_003093_040 0.1929377349 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
15 Hb_002046_010 0.1936558999 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001269_650 0.1946181516 - - transporter, putative [Ricinus communis]
17 Hb_001085_070 0.1971584475 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
18 Hb_002316_070 0.197904178 - - PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]
19 Hb_002301_100 0.1989501975 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
20 Hb_172112_020 0.2033249444 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]

Gene co-expression network

sample Hb_027792_020 Hb_027792_020 Hb_000215_160 Hb_000215_160 Hb_027792_020--Hb_000215_160 Hb_002374_230 Hb_002374_230 Hb_027792_020--Hb_002374_230 Hb_000742_170 Hb_000742_170 Hb_027792_020--Hb_000742_170 Hb_004724_410 Hb_004724_410 Hb_027792_020--Hb_004724_410 Hb_000212_460 Hb_000212_460 Hb_027792_020--Hb_000212_460 Hb_003292_030 Hb_003292_030 Hb_027792_020--Hb_003292_030 Hb_001098_050 Hb_001098_050 Hb_000215_160--Hb_001098_050 Hb_000215_160--Hb_004724_410 Hb_127552_040 Hb_127552_040 Hb_000215_160--Hb_127552_040 Hb_000215_160--Hb_003292_030 Hb_032876_030 Hb_032876_030 Hb_000215_160--Hb_032876_030 Hb_003093_040 Hb_003093_040 Hb_002374_230--Hb_003093_040 Hb_003159_140 Hb_003159_140 Hb_002374_230--Hb_003159_140 Hb_005542_130 Hb_005542_130 Hb_002374_230--Hb_005542_130 Hb_000175_410 Hb_000175_410 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_002046_010 Hb_002046_010 Hb_000742_170--Hb_002046_010 Hb_003683_010 Hb_003683_010 Hb_000742_170--Hb_003683_010 Hb_000022_150 Hb_000022_150 Hb_000742_170--Hb_000022_150 Hb_005333_050 Hb_005333_050 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190 Hb_000025_270 Hb_000025_270 Hb_004724_410--Hb_000025_270 Hb_001623_280 Hb_001623_280 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_003020_030 Hb_003020_030 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_004724_410--Hb_003292_030 Hb_033152_020 Hb_033152_020 Hb_000212_460--Hb_033152_020 Hb_002271_010 Hb_002271_010 Hb_000212_460--Hb_002271_010 Hb_000212_460--Hb_002046_010 Hb_010921_050 Hb_010921_050 Hb_000212_460--Hb_010921_050 Hb_001269_650 Hb_001269_650 Hb_000212_460--Hb_001269_650 Hb_000212_460--Hb_004724_410 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_003292_030--Hb_005542_130 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.67415 0.277644 1.64638 0.561538 1.15174 0.749363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.514145 0.866855 0.109363 2.53092 1.38105

CAGE analysis