Hb_027846_010

Information

Type -
Description -
Location Contig27846: 2642-3871
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027846_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_184484_010 0.0090922801 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002120_020 0.0176041494 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
4 Hb_038005_010 0.0375768285 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_181476_010 0.0888296666 - - -
6 Hb_007945_040 0.099334125 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_004117_300 0.1001204083 - - -
8 Hb_000917_140 0.1087675224 - - -
9 Hb_004994_060 0.130029417 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_003494_170 0.1325791045 - - -
11 Hb_000017_010 0.132940574 - - -
12 Hb_002028_080 0.1333383838 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
13 Hb_077421_010 0.1335532207 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
14 Hb_011269_050 0.1354318028 - - -
15 Hb_001827_020 0.1362065786 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001768_030 0.1401257844 - - -
17 Hb_000922_230 0.1418843908 - - -
18 Hb_004724_110 0.1452202178 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
19 Hb_000270_570 0.1462079422 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
20 Hb_004642_010 0.1487330309 - - Integrase core domain, putative [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_027846_010 Hb_027846_010 Hb_184484_010 Hb_184484_010 Hb_027846_010--Hb_184484_010 Hb_002120_020 Hb_002120_020 Hb_027846_010--Hb_002120_020 Hb_038005_010 Hb_038005_010 Hb_027846_010--Hb_038005_010 Hb_181476_010 Hb_181476_010 Hb_027846_010--Hb_181476_010 Hb_007945_040 Hb_007945_040 Hb_027846_010--Hb_007945_040 Hb_004117_300 Hb_004117_300 Hb_027846_010--Hb_004117_300 Hb_184484_010--Hb_002120_020 Hb_184484_010--Hb_038005_010 Hb_184484_010--Hb_181476_010 Hb_184484_010--Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_184484_010--Hb_000917_140 Hb_002120_020--Hb_038005_010 Hb_002120_020--Hb_181476_010 Hb_002120_020--Hb_004117_300 Hb_002120_020--Hb_000917_140 Hb_038005_010--Hb_181476_010 Hb_038005_010--Hb_004117_300 Hb_038005_010--Hb_000917_140 Hb_181476_010--Hb_004117_300 Hb_181476_010--Hb_000917_140 Hb_004994_060 Hb_004994_060 Hb_007945_040--Hb_004994_060 Hb_003494_170 Hb_003494_170 Hb_007945_040--Hb_003494_170 Hb_000017_010 Hb_000017_010 Hb_007945_040--Hb_000017_010 Hb_002028_080 Hb_002028_080 Hb_007945_040--Hb_002028_080 Hb_077421_010 Hb_077421_010 Hb_007945_040--Hb_077421_010 Hb_011269_050 Hb_011269_050 Hb_007945_040--Hb_011269_050 Hb_004117_300--Hb_000917_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0222243 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320971 0

CAGE analysis