Hb_027890_010

Information

Type -
Description -
Location Contig27890: 2-1365
Sequence    

Annotation

kegg
ID tcc:TCM_003326
description hypothetical protein
nr
ID XP_012483107.1
description PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027890_010 0.0 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
2 Hb_031691_010 0.0041178519 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_012404_010 0.0223202812 - - -
4 Hb_186440_010 0.0384247843 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_097889_010 0.117132109 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
6 Hb_011537_090 0.1190135908 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
7 Hb_009188_010 0.122586239 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_008976_010 0.1240359041 - - -
9 Hb_000710_120 0.1244366492 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
10 Hb_001309_030 0.1246991067 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_004019_100 0.124839548 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
12 Hb_001972_020 0.1256010594 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_001817_190 0.1257709945 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_010783_010 0.1258815778 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_124540_020 0.1311420797 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_090778_010 0.1323101128 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
17 Hb_011616_060 0.1325380799 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
18 Hb_001662_020 0.132636873 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
19 Hb_026532_010 0.1347611443 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
20 Hb_068031_010 0.2365872493 - - hypothetical protein VITISV_034229 [Vitis vinifera]

Gene co-expression network

sample Hb_027890_010 Hb_027890_010 Hb_031691_010 Hb_031691_010 Hb_027890_010--Hb_031691_010 Hb_012404_010 Hb_012404_010 Hb_027890_010--Hb_012404_010 Hb_186440_010 Hb_186440_010 Hb_027890_010--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_027890_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_027890_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_027890_010--Hb_009188_010 Hb_031691_010--Hb_012404_010 Hb_031691_010--Hb_186440_010 Hb_031691_010--Hb_097889_010 Hb_031691_010--Hb_011537_090 Hb_031691_010--Hb_009188_010 Hb_012404_010--Hb_186440_010 Hb_012404_010--Hb_097889_010 Hb_012404_010--Hb_011537_090 Hb_012404_010--Hb_009188_010 Hb_186440_010--Hb_097889_010 Hb_186440_010--Hb_011537_090 Hb_186440_010--Hb_009188_010 Hb_097889_010--Hb_011537_090 Hb_097889_010--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_097889_010--Hb_008976_010 Hb_000710_120 Hb_000710_120 Hb_097889_010--Hb_000710_120 Hb_001309_030 Hb_001309_030 Hb_097889_010--Hb_001309_030 Hb_004019_100 Hb_004019_100 Hb_097889_010--Hb_004019_100 Hb_011537_090--Hb_009188_010 Hb_011537_090--Hb_008976_010 Hb_011537_090--Hb_000710_120 Hb_011537_090--Hb_001309_030 Hb_011537_090--Hb_004019_100 Hb_009188_010--Hb_008976_010 Hb_009188_010--Hb_000710_120 Hb_009188_010--Hb_001309_030 Hb_009188_010--Hb_004019_100 Hb_001972_020 Hb_001972_020 Hb_009188_010--Hb_001972_020 Hb_001817_190 Hb_001817_190 Hb_009188_010--Hb_001817_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.048737 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0950199

CAGE analysis