Hb_027892_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig27892: 19490-20920
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID ADK56287.1
description LMYC1 [Hevea brasiliensis]
swissprot
ID O23090
description Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1
trembl
ID G3C7G7
description LMYC1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0032440
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027892_010 0.0 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
2 Hb_000249_090 0.0864576892 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
3 Hb_000120_650 0.1029421294 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
4 Hb_000120_120 0.1317478785 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
5 Hb_004705_030 0.1361464776 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000249_130 0.13653254 - - hypothetical protein RCOM_0254640 [Ricinus communis]
7 Hb_013818_060 0.1411534785 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
8 Hb_012725_110 0.1618325689 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
9 Hb_003030_080 0.1634667084 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_002685_090 0.16471378 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
11 Hb_017124_020 0.1679942213 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
12 Hb_000567_250 0.1681957049 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
13 Hb_143629_090 0.1690733645 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
14 Hb_000003_840 0.1711898373 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
15 Hb_000548_040 0.178765463 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
16 Hb_001141_470 0.1841069492 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
17 Hb_004871_050 0.1844244548 - - hypothetical protein F383_22684 [Gossypium arboreum]
18 Hb_024952_010 0.1862787867 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_004048_050 0.1899264171 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
20 Hb_001606_070 0.1924404155 - - fimbrin, putative [Ricinus communis]

Gene co-expression network

sample Hb_027892_010 Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_027892_010--Hb_000249_090 Hb_000120_650 Hb_000120_650 Hb_027892_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_027892_010--Hb_000120_120 Hb_004705_030 Hb_004705_030 Hb_027892_010--Hb_004705_030 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_013818_060 Hb_013818_060 Hb_027892_010--Hb_013818_060 Hb_000249_090--Hb_000120_650 Hb_000249_090--Hb_013818_060 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_000120_650--Hb_002685_090 Hb_000120_650--Hb_013818_060 Hb_004871_050 Hb_004871_050 Hb_000120_650--Hb_004871_050 Hb_000120_120--Hb_013818_060 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_000699_120 Hb_000699_120 Hb_004705_030--Hb_000699_120 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_013818_060--Hb_000249_130 Hb_013818_060--Hb_143629_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
527.577 5.51072 3.84946 22.6331 160.288 214.503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
542.477 214.047 1096.21 63.6116 1.94982

CAGE analysis