Hb_027892_040

Information

Type -
Description -
Location Contig27892: 96240-100497
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14260g
description hypothetical protein
nr
ID XP_012077064.1
description PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
swissprot
ID Q9XG77
description Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1
trembl
ID A0A067KQ25
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_07500 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29110: 96434-100501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027892_040 0.0 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
2 Hb_000045_210 0.1286470498 - - -
3 Hb_012053_010 0.1308169991 - - srpk, putative [Ricinus communis]
4 Hb_001266_030 0.1345136682 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
5 Hb_044653_060 0.1352723546 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
6 Hb_000431_160 0.1357741831 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
7 Hb_000316_100 0.1362315771 - - protein with unknown function [Ricinus communis]
8 Hb_000258_280 0.146158687 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
9 Hb_000270_730 0.1475562443 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
10 Hb_000617_110 0.1514087244 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_001842_080 0.1519392032 - - -
12 Hb_001863_420 0.1528042688 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
13 Hb_000103_550 0.1546595819 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
14 Hb_000853_240 0.1574771519 - - -
15 Hb_000270_620 0.1580440294 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_183612_080 0.1594706822 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
17 Hb_002344_070 0.1599860263 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
18 Hb_058143_010 0.1640717015 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
19 Hb_001386_050 0.166338965 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
20 Hb_003198_010 0.1670482164 - - Valine--tRNA ligase [Gossypium arboreum]

Gene co-expression network

sample Hb_027892_040 Hb_027892_040 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160 Hb_000316_100 Hb_000316_100 Hb_027892_040--Hb_000316_100 Hb_141194_010 Hb_141194_010 Hb_000045_210--Hb_141194_010 Hb_000045_210--Hb_044653_060 Hb_000045_210--Hb_001266_030 Hb_000045_210--Hb_012053_010 Hb_000045_210--Hb_000431_160 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_001266_030--Hb_044653_060 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_044653_060--Hb_000431_160 Hb_044653_060--Hb_000617_110 Hb_000879_210 Hb_000879_210 Hb_044653_060--Hb_000879_210 Hb_004545_130 Hb_004545_130 Hb_044653_060--Hb_004545_130 Hb_000431_160--Hb_000617_110 Hb_000431_160--Hb_004545_130 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000819_070 Hb_000819_070 Hb_000431_160--Hb_000819_070 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0143 4.07565 15.2453 14.2812 14.5468 20.0849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.588 397.592 97.923 12.0905 7.83815

CAGE analysis