Hb_027892_050

Information

Type -
Description -
Location Contig27892: 101796-109053
Sequence    

Annotation

kegg
ID eus:EUTSA_v10002579mg
description hypothetical protein
nr
ID XP_007138649.1
description hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
swissprot
ID Q9AYT7
description Methylthioribose-1-phosphate isomerase OS=Hordeum vulgare GN=IDI2 PE=2 SV=1
trembl
ID K7LC98
description Methylthioribose-1-phosphate isomerase OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0044424
description methylthioribose-1-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027892_050 0.0 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
2 Hb_000956_100 0.048823025 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_002335_010 0.0714354369 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
4 Hb_007103_020 0.0930589731 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
5 Hb_030949_010 0.0992621994 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
6 Hb_001305_020 0.1040032248 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
7 Hb_002250_140 0.109854085 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
8 Hb_008948_010 0.1219210831 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
9 Hb_000041_160 0.1235929809 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
10 Hb_009771_040 0.1253673167 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
11 Hb_000622_030 0.12770583 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
12 Hb_000270_750 0.1279468116 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
13 Hb_002598_020 0.1280600401 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
14 Hb_000834_100 0.1303501324 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
15 Hb_000258_230 0.1306681704 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001907_050 0.1331003491 - - Receptor like protein 6, putative [Theobroma cacao]
17 Hb_008598_010 0.1332005416 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
18 Hb_000245_100 0.133203198 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
19 Hb_005074_010 0.1344680834 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
20 Hb_005051_010 0.1372694885 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_027892_050 Hb_027892_050 Hb_000956_100 Hb_000956_100 Hb_027892_050--Hb_000956_100 Hb_002335_010 Hb_002335_010 Hb_027892_050--Hb_002335_010 Hb_007103_020 Hb_007103_020 Hb_027892_050--Hb_007103_020 Hb_030949_010 Hb_030949_010 Hb_027892_050--Hb_030949_010 Hb_001305_020 Hb_001305_020 Hb_027892_050--Hb_001305_020 Hb_002250_140 Hb_002250_140 Hb_027892_050--Hb_002250_140 Hb_000956_100--Hb_002335_010 Hb_000041_160 Hb_000041_160 Hb_000956_100--Hb_000041_160 Hb_000956_100--Hb_007103_020 Hb_000956_100--Hb_030949_010 Hb_000834_100 Hb_000834_100 Hb_000956_100--Hb_000834_100 Hb_002335_010--Hb_000041_160 Hb_001269_530 Hb_001269_530 Hb_002335_010--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_002335_010--Hb_005074_010 Hb_001913_030 Hb_001913_030 Hb_002335_010--Hb_001913_030 Hb_000258_230 Hb_000258_230 Hb_007103_020--Hb_000258_230 Hb_009771_040 Hb_009771_040 Hb_007103_020--Hb_009771_040 Hb_152277_010 Hb_152277_010 Hb_007103_020--Hb_152277_010 Hb_007103_020--Hb_002250_140 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010 Hb_008948_010 Hb_008948_010 Hb_030949_010--Hb_008948_010 Hb_001907_050 Hb_001907_050 Hb_030949_010--Hb_001907_050 Hb_019925_020 Hb_019925_020 Hb_030949_010--Hb_019925_020 Hb_030949_010--Hb_007103_020 Hb_000622_030 Hb_000622_030 Hb_001305_020--Hb_000622_030 Hb_005051_010 Hb_005051_010 Hb_001305_020--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_001305_020--Hb_002902_070 Hb_005723_090 Hb_005723_090 Hb_001305_020--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_001305_020--Hb_001158_250 Hb_001305_020--Hb_000834_100 Hb_002250_140--Hb_009771_040 Hb_026050_010 Hb_026050_010 Hb_002250_140--Hb_026050_010 Hb_173107_020 Hb_173107_020 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_000258_230 Hb_002250_140--Hb_002335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100699 0.0215142 0.129203 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0209096 0.103972

CAGE analysis