Hb_027892_060

Information

Type -
Description -
Location Contig27892: 113679-128007
Sequence    

Annotation

kegg
ID rcu:RCOM_0711290
description inter-alpha-trypsin inhibitor heavy chain, putative
nr
ID XP_012077071.1
description PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
swissprot
ID F4K5L5
description Protein trichome birefringence-like 16 OS=Arabidopsis thaliana GN=TBL16 PE=2 SV=1
trembl
ID A0A067KG00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07504 PE=4 SV=1
Gene Ontology
ID GO:0005886
description inter-alpha-trypsin inhibitor heavy chain h3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29111: 113694-118429 , PASA_asmbl_29112: 113790-114185 , PASA_asmbl_29113: 114930-117762 , PASA_asmbl_29115: 126971-127427
cDNA
(Sanger)
(ID:Location)		 028_K14r.ab1: 118612-119344

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027892_060 0.0 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
2 Hb_002942_020 0.0598546449 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_017895_050 0.077427155 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
4 Hb_033491_010 0.0797357147 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
5 Hb_118977_020 0.0797627441 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
6 Hb_001437_040 0.0821838075 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
7 Hb_001369_060 0.0823726127 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
8 Hb_002400_220 0.0830163524 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_000617_320 0.0855843326 - - 40S ribosomal protein S21B [Hevea brasiliensis]
10 Hb_007632_250 0.0873403388 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010449_020 0.0885407012 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
12 Hb_006569_020 0.0893349484 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
13 Hb_007992_030 0.0893440206 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
14 Hb_004502_030 0.0895960642 - - unknown [Populus trichocarpa]
15 Hb_004204_030 0.0902042731 - - unknown [Populus trichocarpa]
16 Hb_003125_040 0.0903851184 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
17 Hb_159558_030 0.0910481606 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
18 Hb_007441_340 0.092057233 - - protein with unknown function [Ricinus communis]
19 Hb_007101_100 0.0924391014 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
20 Hb_003453_010 0.0927199257 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027892_060 Hb_027892_060 Hb_002942_020 Hb_002942_020 Hb_027892_060--Hb_002942_020 Hb_017895_050 Hb_017895_050 Hb_027892_060--Hb_017895_050 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_118977_020 Hb_118977_020 Hb_027892_060--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_003125_040 Hb_003125_040 Hb_002942_020--Hb_003125_040 Hb_118419_020 Hb_118419_020 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_000905_190 Hb_000905_190 Hb_002942_020--Hb_000905_190 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_003086_110 Hb_003086_110 Hb_118977_020--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_118977_020--Hb_000617_320 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_001437_040--Hb_007166_050 Hb_001437_040--Hb_003086_110 Hb_001437_040--Hb_003453_010 Hb_001369_060--Hb_002215_050 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_003638_140 Hb_003638_140 Hb_001369_060--Hb_003638_140 Hb_001369_060--Hb_098709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.786 8.72171 6.59005 5.78553 32.7208 43.3461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.845 32.7426 16.6248 6.49449 5.79728

CAGE analysis