Hb_027970_010

Information

Type -
Description -
Location Contig27970: 10-525
Sequence    

Annotation

kegg
ID tcc:TCM_034915
description Receptor protein kinase, putative
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027970_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_002189_020 0.0011887003 - - conserved hypothetical protein [Ricinus communis]
3 Hb_060997_010 0.0011887003 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
4 Hb_000698_050 0.0022013749 - - -
5 Hb_186580_020 0.0025776129 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
6 Hb_001821_040 0.0033888718 - - -
7 Hb_085603_010 0.0062396245 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
8 Hb_000832_260 0.0063061922 - - Protein gar2, putative [Ricinus communis]
9 Hb_109050_010 0.0063061922 - - -
10 Hb_062634_010 0.0078649492 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
11 Hb_011980_030 0.0080356708 - - conserved hypothetical protein [Ricinus communis]
12 Hb_060300_010 0.0104781995 - - hypothetical protein F383_16817 [Gossypium arboreum]
13 Hb_001988_040 0.0110693618 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
14 Hb_001227_050 0.0124093283 - - -
15 Hb_020367_060 0.0124093283 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
16 Hb_098361_010 0.0146026177 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
17 Hb_000581_070 0.0150613369 - - -
18 Hb_007668_030 0.0155937854 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
19 Hb_029344_010 0.0177919219 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_007120_110 0.0188482843 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_027970_010 Hb_027970_010 Hb_002189_020 Hb_002189_020 Hb_027970_010--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_027970_010--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_027970_010--Hb_000698_050 Hb_186580_020 Hb_186580_020 Hb_027970_010--Hb_186580_020 Hb_001821_040 Hb_001821_040 Hb_027970_010--Hb_001821_040 Hb_085603_010 Hb_085603_010 Hb_027970_010--Hb_085603_010 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_002189_020--Hb_186580_020 Hb_000832_260 Hb_000832_260 Hb_002189_020--Hb_000832_260 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_002189_020--Hb_186580_020 Hb_002189_020--Hb_000832_260 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_001821_040 Hb_000698_050--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_000698_050--Hb_109050_010 Hb_186580_020--Hb_085603_010 Hb_186580_020--Hb_060997_010 Hb_186580_020--Hb_000698_050 Hb_062634_010 Hb_062634_010 Hb_186580_020--Hb_062634_010 Hb_001821_040--Hb_060997_010 Hb_001821_040--Hb_000832_260 Hb_001821_040--Hb_109050_010 Hb_085603_010--Hb_062634_010 Hb_001227_050 Hb_001227_050 Hb_085603_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_085603_010--Hb_020367_060 Hb_085603_010--Hb_002189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0633793 0.263634

CAGE analysis