Hb_027998_030

Information

Type -
Description -
Location Contig27998: 20008-23337
Sequence    

Annotation

kegg
ID rcu:RCOM_0298470
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002527130.1
description laccase, putative [Ricinus communis]
swissprot
ID Q9FY79
description Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1
trembl
ID B9SMB1
description Laccase OS=Ricinus communis GN=RCOM_0298470 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29162: 20023-23299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027998_030 0.0 - - laccase, putative [Ricinus communis]
2 Hb_004307_040 0.1629307793 - - -
3 Hb_000175_530 0.1723310406 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
4 Hb_007634_020 0.1738754499 - - -
5 Hb_000580_060 0.1804246284 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
6 Hb_000559_050 0.1822621497 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
7 Hb_001892_160 0.1823760841 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
8 Hb_005568_070 0.1881123645 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
9 Hb_156144_020 0.1908510475 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
10 Hb_000156_030 0.2010532772 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031862_170 0.2015160771 - - immunophilin, putative [Ricinus communis]
12 Hb_003534_040 0.2021910011 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
13 Hb_000441_230 0.2051112177 - - unnamed protein product [Coffea canephora]
14 Hb_010290_020 0.2063901685 - - RAB6-interacting protein, putative [Ricinus communis]
15 Hb_004007_150 0.2066501085 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
16 Hb_000161_100 0.2124216812 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_002217_130 0.2128040252 - - galactinol synthase-1 [Manihot esculenta]
18 Hb_000211_080 0.2129636363 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_073212_010 0.2129996079 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_002026_230 0.2172397421 - - hypothetical protein [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_027998_030 Hb_027998_030 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_010290_020 Hb_010290_020 Hb_004307_040--Hb_010290_020 Hb_004307_040--Hb_000580_060 Hb_005568_070 Hb_005568_070 Hb_004307_040--Hb_005568_070 Hb_003540_140 Hb_003540_140 Hb_004307_040--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_004307_040--Hb_000329_540 Hb_001146_070 Hb_001146_070 Hb_000175_530--Hb_001146_070 Hb_000454_030 Hb_000454_030 Hb_000175_530--Hb_000454_030 Hb_000175_530--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000175_530--Hb_000441_230 Hb_000175_530--Hb_005568_070 Hb_000175_530--Hb_000580_060 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_007634_020--Hb_001892_160 Hb_000580_060--Hb_010290_020 Hb_000580_060--Hb_000441_230 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_000559_050--Hb_002026_230 Hb_000605_010 Hb_000605_010 Hb_000559_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000559_050--Hb_004007_150 Hb_002234_220 Hb_002234_220 Hb_000559_050--Hb_002234_220 Hb_003534_040 Hb_003534_040 Hb_000559_050--Hb_003534_040 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_000007_310 Hb_000007_310 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7112 1.09482 0.120017 0.443449 19.8 17.1388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30174 1.78361 0.100478 2.71181 0.63455

CAGE analysis