Hb_028001_020

Information

Type -
Description -
Location Contig28001: 31699-33627
Sequence    

Annotation

kegg
ID rcu:RCOM_0411660
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.10.1)
nr
ID XP_012079103.1
description PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID A0A067KA18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12279 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028001_020 0.0 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
2 Hb_005779_030 0.1563699703 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
3 Hb_000465_260 0.1702861828 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
4 Hb_000863_030 0.172197256 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
5 Hb_000000_110 0.1751722525 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
6 Hb_000025_400 0.1753332259 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
7 Hb_000110_380 0.1768224892 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
8 Hb_001054_090 0.1808936643 - - Potassium channel SKOR, putative [Ricinus communis]
9 Hb_000540_040 0.1819929078 - - PREDICTED: chitinase 2 [Amborella trichopoda]
10 Hb_000002_360 0.1829868828 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
11 Hb_001341_200 0.1866857522 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
12 Hb_001014_190 0.1870095107 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
13 Hb_012727_010 0.1872442051 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_001141_230 0.1886210358 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
15 Hb_001053_210 0.1905206177 - - -
16 Hb_029510_100 0.1914131535 - - scab resistance family protein [Populus trichocarpa]
17 Hb_003647_040 0.1922462885 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009646_010 0.1934695709 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
19 Hb_105660_010 0.1960933464 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
20 Hb_005016_020 0.1961631426 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_028001_020 Hb_028001_020 Hb_005779_030 Hb_005779_030 Hb_028001_020--Hb_005779_030 Hb_000465_260 Hb_000465_260 Hb_028001_020--Hb_000465_260 Hb_000863_030 Hb_000863_030 Hb_028001_020--Hb_000863_030 Hb_000000_110 Hb_000000_110 Hb_028001_020--Hb_000000_110 Hb_000025_400 Hb_000025_400 Hb_028001_020--Hb_000025_400 Hb_000110_380 Hb_000110_380 Hb_028001_020--Hb_000110_380 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_000465_260--Hb_009646_010 Hb_000056_280 Hb_000056_280 Hb_000465_260--Hb_000056_280 Hb_004631_110 Hb_004631_110 Hb_000465_260--Hb_004631_110 Hb_000465_260--Hb_001818_060 Hb_000465_260--Hb_000025_400 Hb_033363_010 Hb_033363_010 Hb_000465_260--Hb_033363_010 Hb_000863_030--Hb_005779_030 Hb_039342_010 Hb_039342_010 Hb_000863_030--Hb_039342_010 Hb_001675_010 Hb_001675_010 Hb_000863_030--Hb_001675_010 Hb_010270_010 Hb_010270_010 Hb_000863_030--Hb_010270_010 Hb_002598_010 Hb_002598_010 Hb_000863_030--Hb_002598_010 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_000220_080 Hb_000220_080 Hb_000000_110--Hb_000220_080 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_000025_400--Hb_005016_020 Hb_000025_400--Hb_004631_110 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_001170_010 Hb_001170_010 Hb_000110_380--Hb_001170_010 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368775 1.03858 0.403262 2.08605 0.0206997 0.133202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211442 0.203337 0.105056 1.18444 0.195117

CAGE analysis