Hb_028008_030

Information

Type -
Description -
Location Contig28008: 69293-71198
Sequence    

Annotation

kegg
ID mdm:103445478
description XET02; probable xyloglucan endotransglucosylase/hydrolase protein 23
nr
ID NP_001281042.1
description probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
swissprot
ID Q38907
description Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2
trembl
ID Q8GTJ0
description Xyloglucan endotransglucosylase/hydrolase OS=Malus domestica GN=XET02 PE=2 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29256: 69227-71350 , PASA_asmbl_29257: 70123-70346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028008_030 0.0 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
2 Hb_003805_080 0.0790272729 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
3 Hb_000230_160 0.0858425329 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
4 Hb_001799_090 0.0940480839 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
5 Hb_001998_260 0.0942933851 - - cytochrome P450, putative [Ricinus communis]
6 Hb_039496_010 0.0966626961 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_003967_010 0.106528579 - - cytochrome P450, putative [Ricinus communis]
8 Hb_008001_020 0.1089206207 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
9 Hb_002289_110 0.1135063508 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
10 Hb_003787_060 0.1149053997 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
11 Hb_008705_040 0.1153421159 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_003058_180 0.1249660903 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
13 Hb_005333_120 0.1271108207 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
14 Hb_000286_030 0.127767384 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_001006_030 0.1307029566 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000081_030 0.1309449883 - - BnaC09g05810D [Brassica napus]
17 Hb_000172_740 0.1326460509 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
18 Hb_003266_060 0.1330472173 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
19 Hb_000963_010 0.1348245887 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
20 Hb_004462_040 0.1352907955 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_028008_030 Hb_028008_030 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_001799_090 Hb_001799_090 Hb_028008_030--Hb_001799_090 Hb_001998_260 Hb_001998_260 Hb_028008_030--Hb_001998_260 Hb_039496_010 Hb_039496_010 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_003787_060 Hb_003787_060 Hb_003805_080--Hb_003787_060 Hb_003805_080--Hb_039496_010 Hb_188923_010 Hb_188923_010 Hb_003805_080--Hb_188923_010 Hb_003805_080--Hb_000230_160 Hb_003058_180 Hb_003058_180 Hb_003805_080--Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000081_030 Hb_000081_030 Hb_000230_160--Hb_000081_030 Hb_001856_150 Hb_001856_150 Hb_000230_160--Hb_001856_150 Hb_000286_030 Hb_000286_030 Hb_000230_160--Hb_000286_030 Hb_006314_020 Hb_006314_020 Hb_000230_160--Hb_006314_020 Hb_002289_110 Hb_002289_110 Hb_001799_090--Hb_002289_110 Hb_001799_090--Hb_001998_260 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120 Hb_005144_100 Hb_005144_100 Hb_001998_260--Hb_005144_100 Hb_003266_060 Hb_003266_060 Hb_001998_260--Hb_003266_060 Hb_001998_260--Hb_002289_110 Hb_001998_260--Hb_039496_010 Hb_039496_010--Hb_003787_060 Hb_000934_290 Hb_000934_290 Hb_039496_010--Hb_000934_290 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010 Hb_003967_010--Hb_000230_160 Hb_001006_030 Hb_001006_030 Hb_003967_010--Hb_001006_030 Hb_003967_010--Hb_003266_060 Hb_001493_170 Hb_001493_170 Hb_003967_010--Hb_001493_170 Hb_005333_120 Hb_005333_120 Hb_003967_010--Hb_005333_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.233901 14.7038 2.90104 25.3561 0.360082 0.0412348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421655 0 32.5427 2.32127

CAGE analysis