Hb_028048_020

Information

Type -
Description -
Location Contig28048: 11665-15691
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028048_020 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_000636_010 0.2173971237 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
3 Hb_000946_080 0.2175899064 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Prunus mume]
4 Hb_000959_050 0.2195880717 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
5 Hb_090889_010 0.2260162254 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_000039_190 0.2394650949 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_001247_260 0.2412078851 - - -
8 Hb_006356_010 0.2441107849 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_003062_020 0.2445764654 - - Polyprotein, putative [Solanum demissum]
10 Hb_002154_080 0.2477830854 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
11 Hb_131719_010 0.250025615 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
12 Hb_001040_090 0.2530117836 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
13 Hb_003527_020 0.2553965577 - - BnaC01g27150D [Brassica napus]
14 Hb_089568_010 0.2592084387 - - ferric reductase oxidase [Manihot esculenta]
15 Hb_000227_260 0.2613289461 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
16 Hb_001587_050 0.2615319679 - - -
17 Hb_001405_230 0.2624577845 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
18 Hb_000987_160 0.2683212411 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
19 Hb_012807_070 0.2715743212 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
20 Hb_004374_100 0.2734476761 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]

Gene co-expression network

sample Hb_028048_020 Hb_028048_020 Hb_000636_010 Hb_000636_010 Hb_028048_020--Hb_000636_010 Hb_000946_080 Hb_000946_080 Hb_028048_020--Hb_000946_080 Hb_000959_050 Hb_000959_050 Hb_028048_020--Hb_000959_050 Hb_090889_010 Hb_090889_010 Hb_028048_020--Hb_090889_010 Hb_000039_190 Hb_000039_190 Hb_028048_020--Hb_000039_190 Hb_001247_260 Hb_001247_260 Hb_028048_020--Hb_001247_260 Hb_000636_010--Hb_001247_260 Hb_000636_010--Hb_000959_050 Hb_080033_020 Hb_080033_020 Hb_000636_010--Hb_080033_020 Hb_032733_030 Hb_032733_030 Hb_000636_010--Hb_032733_030 Hb_003527_020 Hb_003527_020 Hb_000636_010--Hb_003527_020 Hb_131719_010 Hb_131719_010 Hb_000946_080--Hb_131719_010 Hb_002639_130 Hb_002639_130 Hb_000946_080--Hb_002639_130 Hb_004176_090 Hb_004176_090 Hb_000946_080--Hb_004176_090 Hb_001631_110 Hb_001631_110 Hb_000946_080--Hb_001631_110 Hb_017098_020 Hb_017098_020 Hb_000946_080--Hb_017098_020 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_000959_050--Hb_003527_020 Hb_000959_050--Hb_001247_260 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_003062_020 Hb_003062_020 Hb_090889_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_090889_010--Hb_012807_070 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_090889_010--Hb_000039_190 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_000039_190--Hb_003062_020 Hb_003050_010 Hb_003050_010 Hb_000039_190--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_000039_190--Hb_000987_160 Hb_001247_260--Hb_032733_030 Hb_001247_260--Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_001247_260--Hb_000512_050 Hb_028248_010 Hb_028248_010 Hb_001247_260--Hb_028248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00926493 0.0155385 0 0.00479012 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00361644 0.0195431

CAGE analysis