Hb_028071_010

Information

Type -
Description -
Location Contig28071: 9070-11575
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0P5S7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_28234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028071_010 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_000922_420 0.1878667875 - - glutaredoxin-1, grx1, putative [Ricinus communis]
3 Hb_006671_020 0.1927030757 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
4 Hb_004342_020 0.2356958654 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
5 Hb_002067_010 0.2719857163 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000424_020 0.2947944134 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
7 Hb_013016_010 0.3025900422 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002450_040 0.3041052302 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
9 Hb_000365_170 0.3060667934 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
10 Hb_001377_030 0.3075883365 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
11 Hb_010080_010 0.3078635118 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
12 Hb_002232_190 0.308364265 - - conserved hypothetical protein [Ricinus communis]
13 Hb_019715_010 0.3088051596 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_000088_220 0.3111563579 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
15 Hb_011671_170 0.3148670045 - - PREDICTED: protein DYAD [Jatropha curcas]
16 Hb_001277_280 0.3155922041 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
17 Hb_001507_080 0.3159167142 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
18 Hb_005725_200 0.3187810231 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
19 Hb_063805_010 0.3191340602 - - -
20 Hb_004128_200 0.3194135305 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]

Gene co-expression network

sample Hb_028071_010 Hb_028071_010 Hb_000922_420 Hb_000922_420 Hb_028071_010--Hb_000922_420 Hb_006671_020 Hb_006671_020 Hb_028071_010--Hb_006671_020 Hb_004342_020 Hb_004342_020 Hb_028071_010--Hb_004342_020 Hb_002067_010 Hb_002067_010 Hb_028071_010--Hb_002067_010 Hb_000424_020 Hb_000424_020 Hb_028071_010--Hb_000424_020 Hb_013016_010 Hb_013016_010 Hb_028071_010--Hb_013016_010 Hb_000922_420--Hb_004342_020 Hb_002450_040 Hb_002450_040 Hb_000922_420--Hb_002450_040 Hb_006831_100 Hb_006831_100 Hb_000922_420--Hb_006831_100 Hb_003702_040 Hb_003702_040 Hb_000922_420--Hb_003702_040 Hb_000297_110 Hb_000297_110 Hb_000922_420--Hb_000297_110 Hb_002950_090 Hb_002950_090 Hb_006671_020--Hb_002950_090 Hb_000088_220 Hb_000088_220 Hb_006671_020--Hb_000088_220 Hb_006671_020--Hb_000922_420 Hb_005725_200 Hb_005725_200 Hb_006671_020--Hb_005725_200 Hb_000866_280 Hb_000866_280 Hb_006671_020--Hb_000866_280 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_001507_080 Hb_001507_080 Hb_002067_010--Hb_001507_080 Hb_074792_010 Hb_074792_010 Hb_002067_010--Hb_074792_010 Hb_003430_040 Hb_003430_040 Hb_002067_010--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_002067_010--Hb_003874_010 Hb_002067_010--Hb_004342_020 Hb_010080_010 Hb_010080_010 Hb_002067_010--Hb_010080_010 Hb_000436_100 Hb_000436_100 Hb_000424_020--Hb_000436_100 Hb_029142_030 Hb_029142_030 Hb_000424_020--Hb_029142_030 Hb_002255_040 Hb_002255_040 Hb_000424_020--Hb_002255_040 Hb_000424_020--Hb_011249_030 Hb_001930_030 Hb_001930_030 Hb_000424_020--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000424_020--Hb_000003_300 Hb_124951_010 Hb_124951_010 Hb_013016_010--Hb_124951_010 Hb_013016_010--Hb_074792_010 Hb_000317_190 Hb_000317_190 Hb_013016_010--Hb_000317_190 Hb_000653_020 Hb_000653_020 Hb_013016_010--Hb_000653_020 Hb_002600_130 Hb_002600_130 Hb_013016_010--Hb_002600_130 Hb_000189_390 Hb_000189_390 Hb_013016_010--Hb_000189_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0741154 0.0496817 0.613726 0 0.193455 0.14353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0566761 0.089143 0.0815292 0.0898285 0

CAGE analysis