Hb_028089_010

Information

Type -
Description -
Location Contig28089: 13374-23339
Sequence    

Annotation

kegg
ID rcu:RCOM_1108890
description aspartate kinase, putative (EC:1.1.1.3)
nr
ID XP_012066287.1
description PREDICTED: homoserine dehydrogenase [Jatropha curcas]
swissprot
ID Q8K9U9
description Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrA PE=3 SV=1
trembl
ID A0A067LEG8
description Homoserine dehydrogenase OS=Jatropha curcas GN=JCGZ_23847 PE=3 SV=1
Gene Ontology
ID GO:0005829
description homoserine dehydrogenase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29319: 13431-20329 , PASA_asmbl_29320: 15411-15664 , PASA_asmbl_29321: 22002-22618 , PASA_asmbl_29322: 22659-23306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028089_010 0.0 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
2 Hb_002835_370 0.0656245193 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
3 Hb_009548_020 0.0671746321 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_001141_020 0.0748026181 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
5 Hb_004619_030 0.0773137864 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
6 Hb_000032_100 0.0814072427 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
7 Hb_188063_020 0.083178961 - - conserved hypothetical protein [Ricinus communis]
8 Hb_024570_010 0.0832375201 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
9 Hb_002025_020 0.083359482 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
10 Hb_003163_020 0.0839307587 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
11 Hb_001696_010 0.0846611906 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
12 Hb_000571_110 0.0854242017 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
13 Hb_000796_220 0.0861407322 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
14 Hb_002271_030 0.0869093712 - - Vacuolar protein sorting protein, putative [Ricinus communis]
15 Hb_000832_020 0.0876662115 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
16 Hb_004225_050 0.0890621779 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_006915_030 0.0891795423 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
18 Hb_012022_090 0.0894752081 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
19 Hb_005269_070 0.0904195066 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
20 Hb_002276_170 0.0905465776 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028089_010 Hb_028089_010 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_000032_100 Hb_000032_100 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020 Hb_004221_020 Hb_004221_020 Hb_002835_370--Hb_004221_020 Hb_002025_020 Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_000072_220 Hb_000072_220 Hb_002835_370--Hb_000072_220 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_002835_370--Hb_009548_020 Hb_009548_020--Hb_188063_020 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_003163_020 Hb_003163_020 Hb_004619_030--Hb_003163_020 Hb_000347_070 Hb_000347_070 Hb_004619_030--Hb_000347_070 Hb_000011_200 Hb_000011_200 Hb_004619_030--Hb_000011_200 Hb_011930_160 Hb_011930_160 Hb_004619_030--Hb_011930_160 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_000617_180 Hb_000617_180 Hb_004619_030--Hb_000617_180 Hb_000832_020 Hb_000832_020 Hb_000032_100--Hb_000832_020 Hb_019654_190 Hb_019654_190 Hb_000032_100--Hb_019654_190 Hb_000723_130 Hb_000723_130 Hb_000032_100--Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000032_100--Hb_002311_040 Hb_090804_010 Hb_090804_010 Hb_000032_100--Hb_090804_010 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_002849_100 Hb_002849_100 Hb_188063_020--Hb_002849_100 Hb_028912_050 Hb_028912_050 Hb_188063_020--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_188063_020--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_188063_020--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76883 4.13183 5.30509 4.8262 8.49687 8.88342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.29577 4.80868 11.5626 6.59631 6.28057

CAGE analysis