Hb_028105_020

Information

Type -
Description -
Location Contig28105: 33431-34557
Sequence    

Annotation

kegg
ID vvi:104878882
description uncharacterized LOC104878882
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028105_020 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_162933_010 0.0011881405 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_003463_040 0.003628803 - - -
4 Hb_003694_070 0.0081064246 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
5 Hb_017279_030 0.0112161877 - - -
6 Hb_007111_020 0.0122648586 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
7 Hb_013874_010 0.0145274657 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
8 Hb_024128_010 0.01507763 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
9 Hb_139518_020 0.0171489369 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_011114_050 0.0171631468 - - -
11 Hb_002417_040 0.0182100069 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_047623_010 0.0197945326 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
13 Hb_003401_040 0.0212551134 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
14 Hb_171554_060 0.021960684 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
15 Hb_053575_010 0.0254216639 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_019299_040 0.0303015011 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
17 Hb_042795_010 0.0346613928 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_086455_010 0.0353664686 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
19 Hb_002628_030 0.0364627839 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_016671_020 0.0381725755 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_028105_020 Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_028105_020--Hb_162933_010 Hb_003463_040 Hb_003463_040 Hb_028105_020--Hb_003463_040 Hb_003694_070 Hb_003694_070 Hb_028105_020--Hb_003694_070 Hb_017279_030 Hb_017279_030 Hb_028105_020--Hb_017279_030 Hb_007111_020 Hb_007111_020 Hb_028105_020--Hb_007111_020 Hb_013874_010 Hb_013874_010 Hb_028105_020--Hb_013874_010 Hb_162933_010--Hb_003463_040 Hb_162933_010--Hb_003694_070 Hb_162933_010--Hb_007111_020 Hb_162933_010--Hb_017279_030 Hb_024128_010 Hb_024128_010 Hb_162933_010--Hb_024128_010 Hb_003463_040--Hb_003694_070 Hb_003463_040--Hb_007111_020 Hb_003463_040--Hb_024128_010 Hb_139518_020 Hb_139518_020 Hb_003463_040--Hb_139518_020 Hb_003694_070--Hb_007111_020 Hb_003694_070--Hb_024128_010 Hb_003694_070--Hb_139518_020 Hb_017279_030--Hb_013874_010 Hb_011114_050 Hb_011114_050 Hb_017279_030--Hb_011114_050 Hb_003401_040 Hb_003401_040 Hb_017279_030--Hb_003401_040 Hb_053575_010 Hb_053575_010 Hb_017279_030--Hb_053575_010 Hb_007111_020--Hb_024128_010 Hb_007111_020--Hb_139518_020 Hb_002417_040 Hb_002417_040 Hb_007111_020--Hb_002417_040 Hb_047623_010 Hb_047623_010 Hb_007111_020--Hb_047623_010 Hb_013874_010--Hb_011114_050 Hb_013874_010--Hb_003401_040 Hb_013874_010--Hb_053575_010 Hb_013874_010--Hb_162933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0241442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0807791

CAGE analysis