Hb_028115_010

Information

Type -
Description -
Location Contig28115: 8071-9305
Sequence    

Annotation

kegg
ID rcu:RCOM_1494310
description hypothetical protein
nr
ID XP_002516037.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQL8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494310 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028115_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010872_040 0.1324321996 - - hypothetical protein F775_31993 [Aegilops tauschii]
3 Hb_005970_010 0.1447464055 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
4 Hb_003972_040 0.1456296096 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
5 Hb_000000_120 0.156805057 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
6 Hb_001014_190 0.1612851738 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_000818_080 0.1628813717 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
8 Hb_001900_060 0.1650300602 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
9 Hb_000120_230 0.1680875918 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
10 Hb_000235_050 0.1698816128 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005181_180 0.1738087353 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029510_100 0.1739977254 - - scab resistance family protein [Populus trichocarpa]
13 Hb_030565_110 0.1768451094 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
14 Hb_000702_060 0.1790357096 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003227_010 0.1817095131 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
16 Hb_003506_020 0.181910616 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
17 Hb_000000_110 0.1830759007 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
18 Hb_001006_270 0.1848222544 - - peptide transporter, putative [Ricinus communis]
19 Hb_000029_440 0.1848518511 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
20 Hb_032208_050 0.185464175 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_028115_010 Hb_028115_010 Hb_010872_040 Hb_010872_040 Hb_028115_010--Hb_010872_040 Hb_005970_010 Hb_005970_010 Hb_028115_010--Hb_005970_010 Hb_003972_040 Hb_003972_040 Hb_028115_010--Hb_003972_040 Hb_000000_120 Hb_000000_120 Hb_028115_010--Hb_000000_120 Hb_001014_190 Hb_001014_190 Hb_028115_010--Hb_001014_190 Hb_000818_080 Hb_000818_080 Hb_028115_010--Hb_000818_080 Hb_003227_010 Hb_003227_010 Hb_010872_040--Hb_003227_010 Hb_000235_050 Hb_000235_050 Hb_010872_040--Hb_000235_050 Hb_010872_040--Hb_005970_010 Hb_010872_040--Hb_001014_190 Hb_000139_140 Hb_000139_140 Hb_010872_040--Hb_000139_140 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_034280_010 Hb_034280_010 Hb_003972_040--Hb_034280_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_000000_120--Hb_003506_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_029510_100 Hb_029510_100 Hb_001014_190--Hb_029510_100 Hb_001014_190--Hb_005970_010 Hb_004330_080 Hb_004330_080 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_019280_020 Hb_019280_020 Hb_001014_190--Hb_019280_020 Hb_001486_060 Hb_001486_060 Hb_000818_080--Hb_001486_060 Hb_000793_040 Hb_000793_040 Hb_000818_080--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_000818_080--Hb_002026_080 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_002928_120 Hb_002928_120 Hb_000818_080--Hb_002928_120 Hb_004657_080 Hb_004657_080 Hb_000818_080--Hb_004657_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360631 2.37754 1.07674 5.73638 0.650265 1.52066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549859 0.777763 0.14982 4.94389 1.15956

CAGE analysis