Hb_028207_020

Information

Type -
Description -
Location Contig28207: 8438-11183
Sequence    

Annotation

kegg
ID rcu:RCOM_0507700
description hypothetical protein
nr
ID XP_012092585.1
description PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05251 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29552: 8558-11175 , PASA_asmbl_29553: 8558-10178 , PASA_asmbl_29554: 9514-11175 , PASA_asmbl_29555: 8658-9508 , PASA_asmbl_29556: 9514-10580
cDNA
(Sanger)
(ID:Location)		 029_D15.ab1: 8564-9728 , 035_K07.ab1: 8564-9845

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028207_020 0.0 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
2 Hb_006326_050 0.1022278577 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_002255_040 0.1040718891 - - PREDICTED: biotin synthase [Jatropha curcas]
4 Hb_010367_030 0.1049533511 - - conserved hypothetical protein [Ricinus communis]
5 Hb_065755_030 0.1054765597 - - -
6 Hb_003581_210 0.1060992506 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
7 Hb_011249_030 0.1111890894 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
8 Hb_178968_140 0.111603701 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001328_030 0.1183486076 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
10 Hb_000287_050 0.1210881138 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
11 Hb_029142_030 0.1211066296 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
12 Hb_002986_080 0.1232018538 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
13 Hb_005975_010 0.1272065377 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
14 Hb_000340_130 0.1309441991 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
15 Hb_002870_020 0.1319492562 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
16 Hb_003861_070 0.1329169238 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
17 Hb_006555_040 0.1351761799 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
18 Hb_006816_100 0.1367435441 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
19 Hb_003849_040 0.143180011 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
20 Hb_000436_100 0.1432446187 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]

Gene co-expression network

sample Hb_028207_020 Hb_028207_020 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_002255_040 Hb_002255_040 Hb_028207_020--Hb_002255_040 Hb_010367_030 Hb_010367_030 Hb_028207_020--Hb_010367_030 Hb_065755_030 Hb_065755_030 Hb_028207_020--Hb_065755_030 Hb_003581_210 Hb_003581_210 Hb_028207_020--Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_028207_020--Hb_011249_030 Hb_002870_020 Hb_002870_020 Hb_006326_050--Hb_002870_020 Hb_178968_140 Hb_178968_140 Hb_006326_050--Hb_178968_140 Hb_029142_030 Hb_029142_030 Hb_006326_050--Hb_029142_030 Hb_006326_050--Hb_002255_040 Hb_006326_050--Hb_065755_030 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_029142_030 Hb_002255_040--Hb_011249_030 Hb_002255_040--Hb_003581_210 Hb_000424_020 Hb_000424_020 Hb_002255_040--Hb_000424_020 Hb_010367_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_010367_030--Hb_001328_030 Hb_002986_080 Hb_002986_080 Hb_010367_030--Hb_002986_080 Hb_003861_070 Hb_003861_070 Hb_010367_030--Hb_003861_070 Hb_010367_030--Hb_065755_030 Hb_065755_030--Hb_178968_140 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_003581_210--Hb_011249_030 Hb_000983_120 Hb_000983_120 Hb_003581_210--Hb_000983_120 Hb_039605_010 Hb_039605_010 Hb_003581_210--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_003581_210--Hb_004128_200 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_011249_030--Hb_004128_200 Hb_011249_030--Hb_029142_030 Hb_011249_030--Hb_065755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.1674 37.9136 136.507 46.5959 37.8348 35.2028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2384 30.4608 14.566 18.5284 38.103

CAGE analysis