Hb_028207_030

Information

Type -
Description -
Location Contig28207: 11305-12021
Sequence    

Annotation

kegg
ID cit:102619607
description non-specific lipid-transfer protein 8-like
nr
ID XP_006482792.1
description PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
swissprot
ID Q9ZPW9
description Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1
trembl
ID A0A067DSM7
description Non-specific lipid-transfer protein OS=Citrus sinensis GN=CISIN_1g043898mg PE=3 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028207_030 0.0 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
2 Hb_000077_460 0.0739890702 - - -
3 Hb_002762_070 0.0952995315 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_031954_010 0.1059236654 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004341_010 0.1102419757 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_031862_090 0.1122964729 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
7 Hb_027445_080 0.1157433719 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
8 Hb_003439_090 0.1157623353 - - kinase, putative [Ricinus communis]
9 Hb_000045_180 0.1159789991 - - aquaporin PIP1 [Hevea brasiliensis]
10 Hb_000365_290 0.1170858076 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
11 Hb_004724_070 0.1226838519 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
12 Hb_001283_010 0.1233542241 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
13 Hb_002282_030 0.123645059 - - -
14 Hb_008001_020 0.1274065941 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
15 Hb_001021_140 0.12769423 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_000891_060 0.1284342349 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
17 Hb_007850_040 0.1284352733 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013914_020 0.1306541499 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_000616_060 0.1314952814 - - -
20 Hb_004837_170 0.1329547167 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]

Gene co-expression network

sample Hb_028207_030 Hb_028207_030 Hb_000077_460 Hb_000077_460 Hb_028207_030--Hb_000077_460 Hb_002762_070 Hb_002762_070 Hb_028207_030--Hb_002762_070 Hb_031954_010 Hb_031954_010 Hb_028207_030--Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_028207_030--Hb_004341_010 Hb_031862_090 Hb_031862_090 Hb_028207_030--Hb_031862_090 Hb_027445_080 Hb_027445_080 Hb_028207_030--Hb_027445_080 Hb_017866_020 Hb_017866_020 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_001283_010 Hb_001283_010 Hb_000077_460--Hb_001283_010 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_002003_020 Hb_002003_020 Hb_000077_460--Hb_002003_020 Hb_002762_070--Hb_027445_080 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_017661_020 Hb_017661_020 Hb_002762_070--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_002762_070--Hb_004837_170 Hb_002762_070--Hb_031862_090 Hb_031954_010--Hb_004341_010 Hb_031954_010--Hb_001283_010 Hb_031954_010--Hb_002762_070 Hb_031954_010--Hb_000077_460 Hb_031954_010--Hb_004837_170 Hb_004341_010--Hb_004837_170 Hb_004341_010--Hb_002762_070 Hb_004341_010--Hb_000077_460 Hb_004341_010--Hb_001283_010 Hb_005203_010 Hb_005203_010 Hb_031862_090--Hb_005203_010 Hb_002282_030 Hb_002282_030 Hb_031862_090--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_031862_090--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_031862_090--Hb_000616_060 Hb_031862_090--Hb_027445_080 Hb_000575_010 Hb_000575_010 Hb_031862_090--Hb_000575_010 Hb_027445_080--Hb_017661_020 Hb_027445_080--Hb_005203_010 Hb_027445_080--Hb_004837_170 Hb_027445_080--Hb_002282_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0558703 33.1351 0.712635 22.212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 32.1448 0.931749

CAGE analysis