Hb_028227_010

Information

Type -
Description -
Location Contig28227: 10835-16026
Sequence    

Annotation

kegg
ID rcu:RCOM_0516650
description catalytic, putative
nr
ID XP_012066487.1
description PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23676 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29564: 11019-15953 , PASA_asmbl_29565: 10979-12684 , PASA_asmbl_29566: 13095-13410 , PASA_asmbl_29567: 13983-14097
cDNA
(Sanger)
(ID:Location)		 025_P21.ab1: 10979-12674 , 027_G14.ab1: 10979-12684

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_010 0.0 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
2 Hb_000208_260 0.0837844804 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
3 Hb_001948_130 0.0905633165 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
4 Hb_003549_090 0.1033987329 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_002248_110 0.1047728766 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
6 Hb_058999_030 0.1076912931 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
7 Hb_029904_020 0.1086990449 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
8 Hb_000138_140 0.1168634874 - - hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
9 Hb_002398_030 0.1188386885 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_010150_020 0.1191366738 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
11 Hb_000007_280 0.1206485532 - - hypothetical protein VITISV_000066 [Vitis vinifera]
12 Hb_048476_150 0.1211941147 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
13 Hb_012215_010 0.1216249016 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
14 Hb_000933_010 0.1218148126 - - -
15 Hb_010925_020 0.1222723619 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
16 Hb_011310_130 0.1230323688 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
17 Hb_002942_060 0.1231253491 - - RNA-binding protein, putative [Ricinus communis]
18 Hb_000617_010 0.123182143 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
19 Hb_007062_020 0.1247262372 - - gcn4-complementing protein, putative [Ricinus communis]
20 Hb_013726_080 0.1249707667 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_028227_010 Hb_028227_010 Hb_000208_260 Hb_000208_260 Hb_028227_010--Hb_000208_260 Hb_001948_130 Hb_001948_130 Hb_028227_010--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_028227_010--Hb_003549_090 Hb_002248_110 Hb_002248_110 Hb_028227_010--Hb_002248_110 Hb_058999_030 Hb_058999_030 Hb_028227_010--Hb_058999_030 Hb_029904_020 Hb_029904_020 Hb_028227_010--Hb_029904_020 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_000208_260--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_017295_010 Hb_017295_010 Hb_001948_130--Hb_017295_010 Hb_001948_130--Hb_000208_260 Hb_001109_060 Hb_001109_060 Hb_001948_130--Hb_001109_060 Hb_000107_210 Hb_000107_210 Hb_001948_130--Hb_000107_210 Hb_001948_130--Hb_029904_020 Hb_000008_220 Hb_000008_220 Hb_001948_130--Hb_000008_220 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_003549_090--Hb_058999_030 Hb_002248_110--Hb_058999_030 Hb_001269_230 Hb_001269_230 Hb_002248_110--Hb_001269_230 Hb_017700_010 Hb_017700_010 Hb_002248_110--Hb_017700_010 Hb_002248_110--Hb_001188_060 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020 Hb_058999_030--Hb_002398_030 Hb_058999_030--Hb_017700_010 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_029904_020--Hb_003549_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3764 16.2214 24.4169 26.7946 18.85 44.9993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25533 7.28188 14.064 11.8615 17.5415

CAGE analysis