Hb_028227_020

Information

Type -
Description -
Location Contig28227: 16987-21612
Sequence    

Annotation

kegg
ID cit:102609025
description alpha-ketoglutarate-dependent dioxygenase alkB-like
nr
ID XP_012085682.1
description PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
swissprot
ID Q9SA98
description Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2
trembl
ID A0A067JS77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17964 PE=4 SV=1
Gene Ontology
ID GO:0016706
description alpha-ketoglutarate-dependent dioxygenase alkb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29568: 16989-20648 , PASA_asmbl_29569: 22069-22878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_020 0.0 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
2 Hb_001157_020 0.0489420843 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
3 Hb_009694_010 0.0566783257 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005697_060 0.0633515543 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
5 Hb_012725_050 0.0645646146 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
6 Hb_001936_080 0.0656864919 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
7 Hb_000120_790 0.0709717609 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
8 Hb_054865_120 0.0709878096 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_001662_150 0.072414205 - - Scaffold attachment factor B1 [Medicago truncatula]
10 Hb_001234_080 0.0726098372 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
11 Hb_007163_070 0.0730437621 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
12 Hb_001821_010 0.0736657911 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
13 Hb_007632_030 0.0762121379 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
14 Hb_001512_060 0.0768317853 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
15 Hb_002805_270 0.0771743188 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_002687_130 0.0775284267 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
17 Hb_000960_060 0.0776387283 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
18 Hb_118707_030 0.0779190939 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
19 Hb_001489_060 0.0783192063 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
20 Hb_010921_010 0.0787805887 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]

Gene co-expression network

sample Hb_028227_020 Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_009694_010--Hb_005697_060 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_012725_050--Hb_001105_030 Hb_012725_050--Hb_001821_010 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.86025 2.93036 6.82705 5.27364 9.66808 10.001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8474 12.2659 6.30833 5.23163 5.50947

CAGE analysis