Hb_028227_050

Information

Type -
Description -
Location Contig28227: 35663-36517
Sequence    

Annotation

kegg
ID rcu:RCOM_1079920
description hypothetical protein
nr
ID XP_012085686.1
description PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID A0A067K4S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_050 0.0 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
2 Hb_001671_130 0.0500706092 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_009663_030 0.0887022816 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_001287_070 0.0931914226 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
5 Hb_002995_060 0.1000814761 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
6 Hb_011068_010 0.1003648221 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
7 Hb_001832_180 0.1007275952 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
8 Hb_019064_010 0.1024235293 - - -
9 Hb_006901_020 0.10392587 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
10 Hb_003337_080 0.1070843596 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_000039_210 0.1100410799 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
12 Hb_000029_390 0.1116619545 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000010_380 0.1117764539 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
14 Hb_009093_020 0.1122263762 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
15 Hb_005000_120 0.1127832831 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
16 Hb_000841_040 0.1128427542 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
17 Hb_003090_050 0.1142257412 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
18 Hb_000111_460 0.1146067546 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
19 Hb_000282_100 0.1156565835 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_000037_090 0.115877796 - - Na(+)/H(+) antiporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_028227_050 Hb_028227_050 Hb_001671_130 Hb_001671_130 Hb_028227_050--Hb_001671_130 Hb_009663_030 Hb_009663_030 Hb_028227_050--Hb_009663_030 Hb_001287_070 Hb_001287_070 Hb_028227_050--Hb_001287_070 Hb_002995_060 Hb_002995_060 Hb_028227_050--Hb_002995_060 Hb_011068_010 Hb_011068_010 Hb_028227_050--Hb_011068_010 Hb_001832_180 Hb_001832_180 Hb_028227_050--Hb_001832_180 Hb_001671_130--Hb_009663_030 Hb_001671_130--Hb_002995_060 Hb_001671_130--Hb_001287_070 Hb_019064_010 Hb_019064_010 Hb_001671_130--Hb_019064_010 Hb_001671_130--Hb_001832_180 Hb_003436_040 Hb_003436_040 Hb_009663_030--Hb_003436_040 Hb_003337_080 Hb_003337_080 Hb_009663_030--Hb_003337_080 Hb_004611_010 Hb_004611_010 Hb_009663_030--Hb_004611_010 Hb_000692_200 Hb_000692_200 Hb_009663_030--Hb_000692_200 Hb_008725_280 Hb_008725_280 Hb_009663_030--Hb_008725_280 Hb_001287_070--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_001287_070--Hb_001046_060 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_003090_050 Hb_003090_050 Hb_001287_070--Hb_003090_050 Hb_000805_080 Hb_000805_080 Hb_001287_070--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_001287_070--Hb_000010_380 Hb_000029_390 Hb_000029_390 Hb_002995_060--Hb_000029_390 Hb_004920_080 Hb_004920_080 Hb_002995_060--Hb_004920_080 Hb_000629_110 Hb_000629_110 Hb_002995_060--Hb_000629_110 Hb_011381_120 Hb_011381_120 Hb_002995_060--Hb_011381_120 Hb_004712_230 Hb_004712_230 Hb_002995_060--Hb_004712_230 Hb_011068_010--Hb_003337_080 Hb_005605_020 Hb_005605_020 Hb_011068_010--Hb_005605_020 Hb_011068_010--Hb_001046_060 Hb_011068_010--Hb_000805_080 Hb_011068_010--Hb_005000_120 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_001832_180--Hb_003090_050 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001832_180--Hb_001287_070 Hb_000282_100 Hb_000282_100 Hb_001832_180--Hb_000282_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.437635 2.85905 0.445448 0.0540506 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.8066

CAGE analysis