Hb_028227_070

Information

Type -
Description -
Location Contig28227: 41656-47508
Sequence    

Annotation

kegg
ID rcu:RCOM_1079900
description yth domain-containing protein, putative
nr
ID XP_012085690.1
description PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067JS81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17969 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29575: 41814-47128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028227_070 0.0 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
2 Hb_002481_080 0.0618793813 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
3 Hb_000504_070 0.0657736405 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_001016_120 0.0677500349 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
5 Hb_010964_040 0.0703774981 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
6 Hb_001584_120 0.0715782674 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
7 Hb_155159_020 0.0771527179 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
8 Hb_000116_270 0.0814751866 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
9 Hb_084646_010 0.0817811859 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
10 Hb_011485_070 0.0843958496 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
11 Hb_005306_180 0.0853736667 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
12 Hb_003847_030 0.0875943372 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
13 Hb_001268_110 0.0877820342 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
14 Hb_004109_310 0.087923994 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
15 Hb_000028_180 0.0888310962 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_165928_030 0.0892349339 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001500_140 0.0896945698 - - pelota, putative [Ricinus communis]
18 Hb_000175_540 0.0898342843 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
19 Hb_019654_030 0.0901698544 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
20 Hb_000095_080 0.0909526164 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_028227_070 Hb_028227_070 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_000504_070 Hb_000504_070 Hb_028227_070--Hb_000504_070 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_007638_030 Hb_007638_030 Hb_010964_040--Hb_007638_030 Hb_004567_090 Hb_004567_090 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_010964_040--Hb_002481_080 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_001159_130 Hb_001159_130 Hb_155159_020--Hb_001159_130 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_155159_020--Hb_084646_010 Hb_155159_020--Hb_000116_270 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12783 7.78547 6.31939 13.2667 6.16364 13.4377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.77075 13.9415 14.7591 16.7804 7.21642

CAGE analysis