Hb_028248_010

Information

Type -
Description -
Location Contig28248: 14873-18113
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028248_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_011716_120 0.1159370857 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
3 Hb_017225_010 0.1988834581 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
4 Hb_165100_010 0.203248929 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_011987_010 0.2126197268 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_085793_010 0.2184673312 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
7 Hb_003205_040 0.2190509486 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_106274_010 0.222290622 - - hypothetical protein VITISV_008825 [Vitis vinifera]
9 Hb_001231_020 0.2255462882 - - -
10 Hb_005551_030 0.2262676134 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
11 Hb_005666_030 0.2276370687 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
12 Hb_000043_040 0.2281394175 - - CTV.19 [Citrus trifoliata]
13 Hb_004968_090 0.2298456554 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
14 Hb_066206_010 0.2326097094 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_019135_010 0.2350701719 - - -
16 Hb_015824_020 0.235137622 - - -
17 Hb_023386_030 0.2354198156 - - -
18 Hb_007632_140 0.2368224758 - - -
19 Hb_000574_290 0.2384139943 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
20 Hb_001247_260 0.2385748597 - - -

Gene co-expression network

sample Hb_028248_010 Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_165100_010 Hb_165100_010 Hb_028248_010--Hb_165100_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010 Hb_085793_010 Hb_085793_010 Hb_028248_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_028248_010--Hb_003205_040 Hb_011716_120--Hb_011987_010 Hb_005666_030 Hb_005666_030 Hb_011716_120--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_011716_120--Hb_005551_030 Hb_106274_010 Hb_106274_010 Hb_011716_120--Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_011716_120--Hb_001231_020 Hb_017225_010--Hb_011716_120 Hb_185839_010 Hb_185839_010 Hb_017225_010--Hb_185839_010 Hb_006474_010 Hb_006474_010 Hb_017225_010--Hb_006474_010 Hb_002760_020 Hb_002760_020 Hb_017225_010--Hb_002760_020 Hb_122028_010 Hb_122028_010 Hb_017225_010--Hb_122028_010 Hb_165100_010--Hb_085793_010 Hb_165100_010--Hb_003205_040 Hb_000043_040 Hb_000043_040 Hb_165100_010--Hb_000043_040 Hb_066206_010 Hb_066206_010 Hb_165100_010--Hb_066206_010 Hb_000574_290 Hb_000574_290 Hb_165100_010--Hb_000574_290 Hb_011987_010--Hb_106274_010 Hb_011987_010--Hb_001231_020 Hb_011987_010--Hb_005551_030 Hb_011987_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_011987_010--Hb_004968_090 Hb_015824_020 Hb_015824_020 Hb_011987_010--Hb_015824_020 Hb_085793_010--Hb_003205_040 Hb_085793_010--Hb_000043_040 Hb_085793_010--Hb_066206_010 Hb_085793_010--Hb_000574_290 Hb_003205_040--Hb_000043_040 Hb_003205_040--Hb_066206_010 Hb_003205_040--Hb_000574_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00540353 0 0.00682853 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0103414 0.0554519

CAGE analysis